Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
611
views
Answer: A: Using already normalized counts
4.9 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
1.1k
views
Answer: A: Bioconductor support site search missing results?
5.0 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
1.3k
views
Answer: A: TCGA isoform expression quantification file - how to reshape data
5.0 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.2k
views
Answer: A: Number and percent of mapped reads from RNA seq analysis.
5.1 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.4k
views
Comment: C: How to analyze RNAseq data with multiple treatment groups and each subject has p
5.2 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
937
views
Job: Computational Biology / Genomics Internship at Denali Therapeutics
internship genomics genetics Job
5.2 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
2.8k
views
Answer: A: Use of pseudoalignment estimated counmts as input to edgeR and Limma-Voom
5.3 years ago Steve Lianoglou ★ 13k
2
votes
0
replies
1.5k
views
Comment: C: newSCESet(countData=all.counts) function not working
5.3 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.5k
views
Comment: C: Enable copying Bioconductor AMI to new region
5.3 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.5k
views
Comment: C: Enable copying Bioconductor AMI to new region
5.3 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
2.9k
views
Comment: C: scRNA-seq: a question about the names of the columns in a Seurat object
5.4 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
2.9k
views
Answer: A: scRNA-seq: a question about the names of the columns in a Seurat object
5.4 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
892
views
Comment: C: DESeq2: Small treatment group, large control group
5.4 years ago Steve Lianoglou ★ 13k
2
votes
0
replies
22k
views
Comment: C: Fisher test in Rna seq
5.4 years ago Steve Lianoglou ★ 13k
2
votes
0
replies
981
views
Answer: A: Help for Research Proposal
5.4 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.1k
views
Answer: A: Get normalized COUNTS Deseq2
5.4 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
2.9k
views
Comment: C: Data normalization and transformation using DESeq2
5.4 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
663
views
Answer: A: DESeq2 namespace load fail
5.5 years ago Steve Lianoglou ★ 13k
3
votes
1
reply
1.6k
views
Answer: A: Seurat to SingleCellExperiment Converting error in MAC
5.5 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
4.3k
views
Comment: C: Finding DE genes from RNA-seq data
5.5 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1000
views
Answer: A: TMM normalization of cancer RNA seq
5.5 years ago Steve Lianoglou ★ 13k
2
votes
2
replies
4.3k
views
Answer: A: Finding DE genes from RNA-seq data
5.5 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
944
views
Comment: C: Newbie to all of this
5.6 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.1k
views
Answer: A: Normalization and Quality Control for Multiple scRNAseq Data Sets
5.6 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
2.5k
views
Comment: C: EdgeR vs DESeq2 with/without lfcShrink
5.7 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.8k
views
Comment: C: CQN offset and edgeR
5.7 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.8k
views
Comment: C: CQN offset and edgeR
5.7 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
1.8k
views
Answer: A: CQN offset and edgeR
5.7 years ago Steve Lianoglou ★ 13k
4
votes
1
reply
2.0k
views
Answer: A: Where to download expected counts instead of normalized RSEM for TCGA LUAD?
5.8 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
1.5k
views
Answer: A: Difficulty extending ExpressionSet
5.8 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
914
views
Comment: C: Identify the normalized count from differential expression
5.9 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
772
views
Comment: C: PROBLEM WHILE IMPORTING FOR edgeR
5.9 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.7k
views
Answer: A: Bioconductor 3.7 is released
6.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
779
views
Answer: A: PCA analysis in R for 780 genes in 20 samples.
6.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
3.3k
views
Answer: A: featureCounts taking 4-10 hours per BAM file?
6.1 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
7.2k
views
Comment: C: Installing an older release of Bioconductor
6.2 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
2.0k
views
Answer: A: Can Tximport average transcript length be used for GOSeq?
6.2 years ago Steve Lianoglou ★ 13k
2
votes
0
replies
1.9k
views
Answer: A: Incredibly high/low foldChange
6.2 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
1.2k
views
Answer: A: voom command broken in limma_3.34.5?
6.3 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
2.8k
views
Comment: C: Limma RNA seq analysis_VOOM
6.4 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.1k
views
Answer: A: Does bioconductor now has microarray cross-platform merging and normalization me
6.4 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
1.3k
views
Comment: C: Unbalanced experiment with multiple samples from each patient.
6.4 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
4.2k
views
Answer: A: How to extract the voom normalized value for each observation?
6.4 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.3k
views
Comment: C: Tac and Bioconductor giving different results
6.5 years ago Steve Lianoglou ★ 13k
2
votes
1
reply
1.3k
views
Answer: A: Tac and Bioconductor giving different results
6.5 years ago Steve Lianoglou ★ 13k
3
votes
0
replies
5.5k
views
Answer: A: Best DEG tool for datasets with FPKM counts?
6.5 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
4.6k
views
Comment: C: edgeR cpm filter
6.6 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
4.6k
views
Comment: C: edgeR cpm filter
6.6 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
3.8k
views
Answer: A: Add new columns to DESeqResults from text file by matching rownames.
6.6 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
1.7k
views
Comment: C: Differential expression of nomalised and log2 transformed data in limma
6.6 years ago Steve Lianoglou ★ 13k
1,506 results • Page 3 of 31
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6