Showing : genetics • reset
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accesing gene name RNAseq
genetics GeneticsPed Genetics
5 months ago Gülsüm • 0
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344
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Job: Bioinformatics Research Associate, Genomics and Genetics
genomes Genetics
5 months ago JP Carter ▴ 40
0
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3
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644
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Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 9 months ago by 65k • written 9 months ago by • 0
3
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5
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915
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calculate distance to a certain sequence in one gene
SummarizedExperiment Genetics
updated 12 months ago by 65k • written 12 months ago by • 0
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869
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
19 months ago gaow • 0
0
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0
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886
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
3.3 years ago António Miguel de Jesus Domingues ▴ 490
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1.1k
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Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
3.5 years ago Vincent J. Carey, Jr. 6.7k
2
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1.2k
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Job: developer/project management position at Harvard Medical School
softwaredevelopment Job job cloudcomputing genetics
3.6 years ago • updated 3.2 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.9k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.8 years ago • updated 3.4 years ago Luo Weijun ★ 1.6k
3
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6
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1.1k
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Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 3.8 years ago by 65k • written 3.8 years ago by ▴ 10
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1
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1.2k
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DiffBind - Counting reads - counts not found
diffbind differential analysis genetics #chip-seq
updated 5.1 years ago by ★ 5.2k • written 5.2 years ago by • 0
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921
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Job: Computational Biology / Genomics Internship at Denali Therapeutics
internship genomics genetics Job
5.2 years ago Steve Lianoglou ★ 13k
0
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0
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756
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package for mismatch distribution?
genetics statistics
5.3 years ago myriam.croze07 • 0
1
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1.1k
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Job: 2 Postdoc and 2 PhD positions in Regulatory genomics / Rare disease Gagneur lab, TU Munich
genomics genetics machine learning Job
5.5 years ago gagneur ▴ 10
0
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1
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1.0k
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Normalization and Quality Control for Multiple scRNAseq Data Sets
normalization rnaseq genetics batch effect dropout
updated 5.5 years ago by ★ 13k • written 5.5 years ago by • 0
0
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1
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1.6k
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Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
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1
reply
958
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co-evolution analysis for RNA
genetics
5.9 years ago tg369 ▴ 40
2
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0
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1.2k
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Job: Statistical Geneticist at Denali Therapeutics, South San Francisco, CA, USA
job genetics drug development neurodegeneration Job
5.9 years ago sandmann.t ▴ 70
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0
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1.2k
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
genetics job biostatistics genomics bioinformatics Job
6.0 years ago xzhousph • 0
1
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3
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2.1k
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Gene ID Duplicates
deseq2 genetics Tutorial
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
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4
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13k
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Normalization by DEseq
Genetics Normalization DESeq Genetics Normalization DESeq
updated 6.2 years ago by • 0 • written 13.5 years ago by ▴ 20
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1.4k
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fisher exact test pairwise associations between gene mutations
genetics
6.7 years ago wasmetqall • 0
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1.6k
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Job: Research Co-ordinator (Full Time)
genetics obesity molecular biology biomedical science Job
6.7 years ago njc65 • 0
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1.2k
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
biostatistics genetics Job
7.0 years ago hong.lee • 0
0
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0
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1.5k
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Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
7.2 years ago • updated 7.0 years ago Luo Weijun ★ 1.6k
0
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1.5k
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Job: Postdoctoral Research Associate, Wellcome Trust-MRC Institute of Metabolic Science (Fixed Term)
genetics job genomics postdoc obesity Job
7.2 years ago njc65 • 0
0
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1
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1.2k
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Extension to GoogleGenomics: getVariantCalls
GoogleGenomics genetics variants
7.2 years ago Vincent J. Carey, Jr. 6.7k
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1.7k
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Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
7.6 years ago dtlabmskcc • 0
0
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0
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949
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What statistical test is appropriate? 2 categorical independent variables, 3 categorical dependent variables, biological replicates
genetics
7.7 years ago efoss ▴ 10
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1.1k
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homologue gene conversion worm to human
biomaRt homologue annotation genetics
7.7 years ago Nemo ▴ 80
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0
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974
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Genetic Association analysis using four siblings among which three were affected and one was normal
genetics plink linkage disequilibrium
7.8 years ago li lilingdu ▴ 450
2
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1.4k
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Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
7.9 years ago enridomenici ▴ 10
1
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1
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1.5k
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Question about EAGenes (TCGAbiolinks)
annotation cancer biomart genetics R
updated 8.1 years ago by ▴ 260 • written 8.1 years ago by • 0
1
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12
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3.3k
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Problem running summarizeOverlaps()
Genetics Genetics
updated 8.2 years ago by ▴ 10 • written 9.9 years ago by ▴ 140
0
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0
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1.6k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
8.8 years ago careers • 0
0
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0
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1.5k
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Job: Come apply for our Epidemiologist, AncestryHealth role
genomics genetics design statistics scientist Job
8.8 years ago careers • 0
2
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0
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1.9k
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Job: 23andMe Job Opportunities
bioinformatician job bioinformatics scientist genetics Job
9.0 years ago rgentleman ★ 5.5k
1
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2.0k
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Job: Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening interactions genetics jobs image analysis Job
9.0 years ago Bernd Fischer ▴ 550
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5
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2.3k
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How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease genetics micro array data microarray
updated 9.1 years ago by 50k • written 9.1 years ago by ▴ 20
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0
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2.1k
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Job: Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics genetics proteomics rnaseq microarray Job
9.1 years ago Feng Hong • 0
0
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1
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3.8k
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DESeq2 - factor base level changes the DE genes.
RNASeq Genetics DESeq2 RNASeq Genetics DESeq2
updated 9.5 years ago by 41k • written 9.8 years ago by ★ 13k
1
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1
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1.6k
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Question about decideTestsDGE()
Genetics edgeR
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 250
2
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0
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2.2k
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Job: Job Opening: Computational Biologist @ Genentech Bioinformatics
Job Sequencing Genetics Cancer
updated 9.6 years ago by ★ 8.2k • written 9.6 years ago by ★ 11k
0
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3
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2.0k
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Error running makeTranscriptDbFromGFF in GenomicFeatures
Genetics TranscriptDb GenomicFeatures
updated 9.6 years ago by ★ 11k • written 9.6 years ago by ▴ 250
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2.2k
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Plot exon number per gene and transcript lengths
Genetics TranscriptDb GenomicFeatures
9.6 years ago Jon Bråte ▴ 250
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8
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2.8k
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Expected number of DE genes?
Genetics edgeR DESeq2 Genetics edgeR DESeq2
updated 9.8 years ago by ▴ 750 • written 9.8 years ago by ▴ 140
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2
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1.3k
views
Can my problem be addressed with Bioconductor?
Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO
updated 9.9 years ago by 65k • written 9.9 years ago by ★ 13k
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2
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2.0k
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UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 9.9 years ago by ▴ 570 • written 9.9 years ago by 16k
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1.7k
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limma: percent of variance explained
Genetics limma Genetics limma
updated 9.9 years ago by 50k • written 9.9 years ago by ▴ 90
0
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2
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1.3k
views
RNA-seq pathway analysis in Canis familiaris
RNASeq Genetics Annotation Canis familiaris gage RNASeq Genetics Annotation gage
updated 9.9 years ago by 65k • written 9.9 years ago by ▴ 140
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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