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Answer: C: GO-terms delivered by GOstats hyperGTest() do not exist in my universe
6.5 years ago Jenny Drnevich ★ 2.0k
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933
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Answer: A: Plotting Gene Expression Data From Multiple Batches
6.8 years ago Jenny Drnevich ★ 2.0k
5
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13k
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Answer: C: Limma: how to get same output as topTable but for all the genes ?
updated 7.3 years ago by 50k • written 15.5 years ago by ★ 2.0k
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Answer: A: Problem after upgrading from affycoretools 1.46.1 to 1.46.3; "vfs customization
7.3 years ago Jenny Drnevich ★ 2.0k
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Answer: A: Problem with installation of org.Hs.eg.db
7.6 years ago Jenny Drnevich ★ 2.0k
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1
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2.5k
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Answer: A: Find if a covariate has effect on gene expression level using edgeR and DESeq2
7.7 years ago Jenny Drnevich ★ 2.0k
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1
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988
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Answer: A: Missing binaries for AnnotationData packages?
8.2 years ago Jenny Drnevich ★ 2.0k
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0
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1.3k
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Answer: A: Collation of differentially expressed genes in Limma
8.3 years ago Jenny Drnevich ★ 2.0k
1
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0
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1.6k
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Answer: A: edgeR data analysis question
updated 9.0 years ago by 50k • written 9.1 years ago by ★ 2.0k
1
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0
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2.6k
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Answer: A: discrepance in DESeq2 results with different design structures
9.0 years ago Jenny Drnevich ★ 2.0k
1
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1
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14k
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Answer: A: Problems updating Bioconductor with R 3.2.0
9.1 years ago Jenny Drnevich ★ 2.0k
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1
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2.2k
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Answer: A: Missing as.list generic from AnnotationDbi?
9.7 years ago Jenny Drnevich ★ 2.0k
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1
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1.9k
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Answer: A: 2 way anova in Bioconductor
12.9 years ago Jenny Drnevich ★ 2.0k
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1
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1.4k
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Answer: A: Comparing Two Affymetrix Arrays Question
12.9 years ago Jenny Drnevich ★ 2.0k
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1.4k
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Answer: A: Comparing Two Affymetrix Arrays Question
12.9 years ago Jenny Drnevich ★ 2.0k
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1
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1.4k
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Answer: A: Comparing Two Affymetrix Arrays Question
12.9 years ago Jenny Drnevich ★ 2.0k
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1
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1.4k
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Answer: A: analysis of reference design with even dye-swap across biological replicates
12.9 years ago Jenny Drnevich ★ 2.0k
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0
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1.1k
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Answer: A: goseq: gene universe
13.1 years ago Jenny Drnevich ★ 2.0k
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1
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1.4k
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Answer: A: Detection calls and LIMMA
13.2 years ago Jenny Drnevich ★ 2.0k
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1.3k
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Answer: A: Using Limma for common reference and paired samples
13.3 years ago Jenny Drnevich ★ 2.0k
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1
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1.3k
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Answer: A: Using Limma for common reference and paired samples
13.3 years ago Jenny Drnevich ★ 2.0k
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0
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1.5k
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Answer: A: question regarding removing probes/probe sets before normalization
13.7 years ago Jenny Drnevich ★ 2.0k
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1
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1.5k
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Answer: A: question regarding removing probes/probe sets before normalization
13.7 years ago Jenny Drnevich ★ 2.0k
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1
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1.5k
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Answer: A: question regarding removing probes/probe sets before normalization
13.7 years ago Jenny Drnevich ★ 2.0k
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0
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2.1k
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Answer: A: Limma: topTable without eBayes?
13.7 years ago Jenny Drnevich ★ 2.0k
0
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0
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951
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Answer: A: Nested Design (Again) & Subset WithinArray Correlation
13.8 years ago Jenny Drnevich ★ 2.0k
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0
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1.0k
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Answer: A: Heatmap: row labels & dendogram
14.2 years ago Jenny Drnevich ★ 2.0k
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1
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3.4k
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Answer: A: problems when trying to use biomaRt
14.2 years ago Jenny Drnevich ★ 2.0k
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0
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3.4k
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Answer: A: problems when trying to use biomaRt
14.2 years ago Jenny Drnevich ★ 2.0k
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0
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3.4k
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Answer: A: problems when trying to use biomaRt
14.2 years ago Jenny Drnevich ★ 2.0k
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0
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704
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Answer: A: FW: Problem in masking individual probes to calculate expression values
14.3 years ago Jenny Drnevich ★ 2.0k
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1
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2.0k
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Answer: A: question about lmFit model
14.3 years ago Jenny Drnevich ★ 2.0k
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0
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601
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Answer: A: R versions 2.10 : simple error, joke or truly intended ?
14.4 years ago Jenny Drnevich ★ 2.0k
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0
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1.3k
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Answer: A: Correlation analysis of replicates
14.5 years ago Jenny Drnevich ★ 2.0k
0
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0
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823
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Answer: A: Does hist (affy) function work on probe-pair values or probe-set values?
14.6 years ago Jenny Drnevich ★ 2.0k
0
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0
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2.6k
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Answer: A: Error while trying to use Genefilter
14.7 years ago Jenny Drnevich ★ 2.0k
0
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1
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1.8k
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Answer: A: question about topTable ranking of limma
14.7 years ago Jenny Drnevich ★ 2.0k
0
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1
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1.8k
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Answer: A: question about topTable ranking of limma
14.7 years ago Jenny Drnevich ★ 2.0k
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0
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2.2k
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Answer: A: venn diagram
14.8 years ago Jenny Drnevich ★ 2.0k
0
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1
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1.3k
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Answer: A: How to install Rgraphviz on Windows - REALLY!
14.9 years ago Jenny Drnevich ★ 2.0k
0
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1
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1.1k
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Answer: A: intraSpotCorrelation consensus values for Single Channel analysis in limma
15.0 years ago Jenny Drnevich ★ 2.0k
0
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1
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957
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Answer: A: limma: duplicates handling
15.1 years ago Jenny Drnevich ★ 2.0k
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1.5k
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Answer: A: genefilter displaying the expression set
15.2 years ago Jenny Drnevich ★ 2.0k
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0
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2.5k
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Answer: A: two color arrays normalization
15.2 years ago Jenny Drnevich ★ 2.0k
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0
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2.5k
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Answer: A: two color arrays normalization
15.2 years ago Jenny Drnevich ★ 2.0k
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0
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2.5k
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Answer: A: two color arrays normalization
15.2 years ago Jenny Drnevich ★ 2.0k
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0
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699
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Answer: A: Confusing results
15.2 years ago Jenny Drnevich ★ 2.0k
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0
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2.5k
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Answer: A: two color arrays normalization
15.2 years ago Jenny Drnevich ★ 2.0k
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1
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1.8k
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Answer: A: ...another question about using weights on microarray analysis
15.2 years ago Jenny Drnevich ★ 2.0k
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1
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1.1k
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Answer: A: Limma without eBayes correction
15.3 years ago Jenny Drnevich ★ 2.0k
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