Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.9k
views
Comment: Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
20 months ago Yang Shi ▴ 10
1
vote
4
replies
1.9k
views
How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2 when DEGs
limma edgeR RSEM
updated 20 months ago by 51k • written 20 months ago by ▴ 10
0
votes
0
replies
1.9k
views
Comment: Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
20 months ago Yang Shi ▴ 10
0
votes
0
replies
877
views
Comment: Comment: Differential expression analysis based on EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
20 months ago Yang Shi ▴ 10
1
vote
2
replies
877
views
Differential expression analysis based on EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2
DESeq2 limma edgeR RSEM
20 months ago Yang Shi ▴ 10
0
votes
1
reply
2.8k
views
Comment: Comment: Which is the best type of data for correlation or survival analysis
2.3 years ago Yang Shi ▴ 10
0
votes
1
reply
2.8k
views
Comment: Comment: Which is the best type of data for correlation or survival analysis
2.3 years ago Yang Shi ▴ 10
4
votes
5
replies
2.8k
views
Which is the best type of data for correlation or survival analysis
TPM RNASeq RSEM DESeq2
updated 2.3 years ago by 42k • written 2.3 years ago by ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: GSVA perfomed on RSEM Expected Count data
2.3 years ago Yang Shi ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: GSVA perfomed on RSEM Expected Count data
2.3 years ago Yang Shi ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: GSVA perfomed on RSEM Expected Count data
2.3 years ago Yang Shi ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: GSVA perfomed on RSEM Expected Count data
2.3 years ago Yang Shi ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: GSVA perfomed on RSEM Expected Count data
2.3 years ago Yang Shi ▴ 10
5
votes
9
replies
2.3k
views
GSVA perfomed on RSEM Expected Count data
GSVA RNA-Seq RSEM Expected_Count
2.3 years ago Yang Shi ▴ 10
0
votes
0
replies
1.5k
views
Comment: Comment: How to judge DEG analysis of these samples could be done by using limma::voom
2.3 years ago Yang Shi ▴ 10
2
votes
2
replies
1.5k
views
How to judge DEG analysis of these samples could be done by using limma::voom
limma Clustering voom RNA-Seq
2.3 years ago Yang Shi ▴ 10
0
votes
0
replies
1.6k
views
Comment: Comment: pre-ranked GSEA or not?
2.3 years ago Yang Shi ▴ 10
0
votes
1
reply
1.6k
views
Comment: Comment: pre-ranked GSEA or not?
2.3 years ago Yang Shi ▴ 10
2
votes
4
replies
1.6k
views
pre-ranked GSEA or not?
log2FC DESeq2 GSEA voom limma
updated 2.3 years ago by 51k • written 2.3 years ago by ▴ 10
0
votes
0
replies
2.1k
views
Comment: Comment: Removing the duplicated genes before limma::voom by using limma::avereps
2.3 years ago Yang Shi ▴ 10
0
votes
1
reply
2.1k
views
Comment: Comment: Removing the duplicated genes before limma::voom by using limma::avereps
2.3 years ago Yang Shi ▴ 10
0
votes
1
reply
2.1k
views
Comment: Comment: Removing the duplicated genes before limma::voom by using limma::avereps
2.3 years ago Yang Shi ▴ 10
5
votes
6
replies
2.1k
views
Removing the duplicated genes before limma::voom by using limma::avereps
RSEM avereps voom limma RNASeq
2.3 years ago Yang Shi ▴ 10
0
votes
0
replies
1.9k
views
Comment: Comment: Doing normalization when using voom for DEG analysis?
2.3 years ago Yang Shi ▴ 10
0
votes
1
reply
1.9k
views
Comment: Comment: Doing normalization when using voom for DEG analysis?
2.3 years ago Yang Shi ▴ 10
2
votes
4
replies
1.9k
views
Doing normalization when using voom for DEG analysis?
limma RSEM voom Normalization
2.3 years ago Yang Shi ▴ 10
0
votes
0
replies
1.2k
views
Comment: Comment: Can I use limma::avereps to remove dupicated genes before conduct DEG based on R
2.3 years ago Yang Shi ▴ 10
0
votes
1
reply
1.2k
views
Comment: Comment: Can I use limma::avereps to remove dupicated genes before conduct DEG based on R
2.3 years ago Yang Shi ▴ 10
3
votes
4
replies
1.2k
views
Can I use limma::avereps to remove dupicated genes before conduct DEG based on RSEM Expected_count data?
limma RNASeq Expected_count DESeq2
2.3 years ago Yang Shi ▴ 10
0
votes
0
replies
2.6k
views
Comment: Comment: Why Negative value from GSVA
2.4 years ago Yang Shi ▴ 10
0
votes
1
reply
2.6k
views
Comment: Comment: Why Negative value from GSVA
2.4 years ago Yang Shi ▴ 10
3
votes
4
replies
2.6k
views
Why Negative value from GSVA
GSVA RNASeq edgeR
2.4 years ago Yang Shi ▴ 10
0
votes
0
replies
1.1k
views
Comment: Comment: How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
2.4 years ago Yang Shi ▴ 10
2
votes
2
replies
1.1k
views
How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
pd.hugene.1.0.st.v1 oligo AffymetrixChip
2.5 years ago • updated 2.4 years ago Yang Shi ▴ 10
1
vote
0
replies
1.3k
views
Comment: Comment: Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation
2.5 years ago Yang Shi ▴ 10
0
votes
0
replies
1.3k
views
Comment: Comment: Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation
2.5 years ago Yang Shi ▴ 10
0
votes
1
reply
1.3k
views
Comment: Comment: Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation
2.5 years ago Yang Shi ▴ 10
2
votes
5
replies
1.3k
views
Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation
pd.hugene.1.0.st.v1 oligo AffymetrixChip
2.5 years ago Yang Shi ▴ 10
0
votes
0
replies
1.4k
views
Comment: Comment: Robust Multi-array Average could get negative value or not?
2.5 years ago Yang Shi ▴ 10
0
votes
1
reply
1.4k
views
Comment: Comment: Robust Multi-array Average could get negative value or not?
2.5 years ago Yang Shi ▴ 10
2
votes
4
replies
1.4k
views
Robust Multi-array Average could get negative value or not?
pd.hg.u219 oligo AffymetrixChip
2.5 years ago Yang Shi ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2.5 years ago Yang Shi ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2.5 years ago Yang Shi ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2.5 years ago Yang Shi ▴ 10
4
votes
10
replies
2.3k
views
Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
2.5 years ago Yang Shi ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2.5 years ago Yang Shi ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2.5 years ago Yang Shi ▴ 10
0
votes
0
replies
2.1k
views
Comment: Comment: Quantile Normalization after rma or not?
2.5 years ago Yang Shi ▴ 10
0
votes
1
reply
2.1k
views
Comment: Comment: Quantile Normalization after rma or not?
2.5 years ago Yang Shi ▴ 10
3
votes
4
replies
2.1k
views
Quantile Normalization after rma or not?
limma Microarray oligo
2.5 years ago Yang Shi ▴ 10
54 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6