Showing : Microarray • reset
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 5 days ago by 58k • written 5 days ago by ▴ 40
3
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2
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145
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Query regarding the use of eBayes + topTable and treat + topTreat
Microarray limma DifferentialExpression
4 weeks ago Nikshay • 0
0
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1
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143
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Re-normalize microarray dataset in R
microarray quantile expression R Normalization
updated 8 weeks ago by ▴ 70 • written 9 weeks ago by • 0
3
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5
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258
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Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 11 weeks ago by 43k • written 3 months ago by • 0
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1
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204
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How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 4 months ago by 3.4k • written 4 months ago by • 0
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2
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299
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RUV4 for microarrays
RUV4 RUV Microarray
4 months ago Antonio • 0
0
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2
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247
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How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
5 months ago waiyin0923 • 0
0
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1
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183
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Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 5 months ago by ★ 3.0k • written 5 months ago by • 0
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2
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218
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How to quantile normalize arraystar lncRNA microarray data?
limma Microarray
5 months ago • updated 4 months ago a.deb • 0
3
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3
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288
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Weird MAplot with DEGs lying along the diagonals
limma Microarray AgilentChip MA-plot Normalization
6 months ago Federico Alessandro • 0
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2
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256
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WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
7 months ago • updated 6 months ago jpwl2 • 0
5
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4
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305
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Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
7 months ago snijesh • 0
1
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2
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444
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How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarray log values
interactions 3factors limma Microarray
7 months ago Dan ▴ 10
3
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9
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402
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limma analysis when only Cy5 was used
MicroarrayData limma Microarray
7 months ago Daniel.Schnell • 0
0
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1
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581
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Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 7 months ago by 43k • written 12.8 years ago by ▴ 10
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8
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1.3k
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how to annotate arrays
affy annotation microarray oligo
updated 9 months ago by 58k • written 6.1 years ago by • 0
0
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1
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304
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Normalisation of protein micro array data using VSN
microarray normalization protein
updated 10 months ago by 13k • written 2.3 years ago by • 0
0
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2
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211
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Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
methylumi minfi microarray epic
17 months ago • updated 10 months ago Nala • 0
0
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0
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317
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how to find consensus modules between 2 datasets by different platform through WGCNA
consensusmodule microarray RNA-seq WGCNA
11 months ago modarzi ▴ 10
1
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3
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593
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Annotating [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] file
microarray annotation affy
11 months ago kiera.lee ▴ 10
4
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7
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337
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Limma sample groups
microarray limma affy cancer
updated 11 months ago by 43k • written 11 months ago by • 0
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2
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318
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Regarding ArrayExpress package
microarray arrayexpress
updated 11 months ago by 58k • written 11 months ago by • 0
0
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2
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281
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What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0 microarray affy r
12 months ago Marco_aurelio • 0
0
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2
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207
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can negative value microarray matrix data analysed by limma directly
limma microarray normalization
updated 12 months ago by 3.4k • written 12 months ago by ▴ 10
1
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5
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326
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TCGA: clinical data and expression data
microarray annotation cancer
updated 12 months ago by 3.4k • written 12 months ago by • 0
3
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1
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210
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Create a '.db' package for agilent
R agilent microarray
updated 12 months ago by 58k • written 12 months ago by ▴ 20
0
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1
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244
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Problem for installing arrayQualityMetrics package?
R Microarray
updated 13 months ago by 3.4k • written 13 months ago by ▴ 10
0
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1
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156
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Input of tscR
microarray normalization tscR time-course
updated 13 months ago by 3.4k • written 13 months ago by • 0
1
vote
1
reply
264
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 14 months ago by 58k • written 14 months ago by ▴ 10
1
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2
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191
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How to construct matrix and fit linear model for this microarray?
microarray dge matrix makecontrasts limma
updated 14 months ago by 43k • written 14 months ago by ▴ 10
2
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3
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239
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Annotation package generation for HTA-2_0 by pdInfoBuilder fails
microarray pdInfoBuilder oligo
updated 14 months ago by 58k • written 14 months ago by • 0
5
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9
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392
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Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
microarray affy
updated 15 months ago by 3.4k • written 15 months ago by ▴ 10
0
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2
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1.4k
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Installing EnhancedVolcano package in R
microarray software error
updated 15 months ago by 3.4k • written 15 months ago by • 0
1
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1
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177
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Problem in analyzing microarray with duplicate or triplicate data
microarray limma
15 months ago peirinl • 0
1
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4
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237
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How to compare a single RNA-Seq sample with microarray samples?
voom rna-seq microarray
updated 15 months ago by 58k • written 15 months ago by ▴ 10
0
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2
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201
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How to process triplicate cel data?
microarray affy cel drugmatrix
updated 15 months ago by 43k • written 15 months ago by • 0
6
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3
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325
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GEOquery: preprocessing log of imported data
GEOquery microarray lumi affy limma
updated 15 months ago by 21k • written 15 months ago by ▴ 40
1
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2
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189
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Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 16 months ago by 3.4k • written 17 months ago by • 0
0
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4
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311
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Agilent two-color microarray analysis with limma: 2x3 factorial design
limma microarray contrast matrix 2x3 factorial design differential expression
updated 17 months ago by 43k • written 18 months ago by • 0
0
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1
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171
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Problem analyzing Affymetrix Microarray data from Clariom S Mouse
affy oligo Clariom S Mouse microarray
updated 17 months ago by 58k • written 17 months ago by • 0
1
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5
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220
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Interpreting a paired limma model
limma microarray
updated 17 months ago by 58k • written 17 months ago by • 0
2
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4
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222
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After successful installation of package why it shows that Error?
software error microarray
updated 17 months ago by 34k • written 17 months ago by ▴ 20
0
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1
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153
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Affymetrix microarray - Limma on timepoint experiment, how to make the design and contrast matrix ?
limma R microarray timepoint affy
updated 17 months ago by 2.8k • written 17 months ago by • 0
0
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126
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fit gene distribution to negative binomial
microarray
18 months ago fabien.tell • 0
1
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1
reply
217
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Trouble using affy library
software error R microarray affy
updated 18 months ago by 58k • written 18 months ago by • 0
1
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4
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170
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package to analyze generic protein microarray data
microarray protein analysis ProteomeProfiler
updated 18 months ago by 43k • written 18 months ago by • 0
2
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3
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455
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Absence of significant gene in DEG list
limma microarray
3.4 years ago • updated 18 months ago nia ▴ 30
23
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0
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26k
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limma moderated t-statistics and B-statistics
Microarray limma
17.0 years ago • updated 11 months ago Gordon Smyth 43k
0
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2
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166
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 19 months ago by 43k • written 19 months ago by • 0
0
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2
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141
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arrayQualityMetrics R for outlier detection
microarray outlier detection
updated 19 months ago by 43k • written 19 months ago by ▴ 20
50 results • Page 1 of 1
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Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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