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how to build a new crlmm CDF annotation package?
crlmm annotation
9.9 years ago Aaron Mackey ▴ 200
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3.4k
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Comment: C: limma, analysis on subset of data gives completely different results
10.4 years ago Aaron Mackey ▴ 200
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2.8k
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Comment: C: total count filter cutoff
10.6 years ago Aaron Mackey ▴ 200
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Comment: C: edgeR
10.6 years ago Aaron Mackey ▴ 200
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Comment: C: edgeR
10.6 years ago Aaron Mackey ▴ 200
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1.9k
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Comment: C: Designing a model with blocking and other interactions
10.7 years ago Aaron Mackey ▴ 200
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B score-like posterior log-odds for edgeR topTags?
10.7 years ago Aaron Mackey ▴ 200
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2.9k
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Comment: C: Odd contrast; does it make statistical sense?
10.8 years ago Aaron Mackey ▴ 200
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2.9k
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Comment: C: Odd contrast; does it make statistical sense?
10.8 years ago Aaron Mackey ▴ 200
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2.7k
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scholarly reference for "don't draw PCA/heatmap dendrograms on DEGs"
Clustering Clustering
updated 11.0 years ago by ★ 1.6k • written 11.0 years ago by ▴ 200
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Comment: C: scholarly reference for "don't draw PCA/heatmap dendrograms on DEGs"
11.0 years ago Aaron Mackey ▴ 200
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1.5k
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Comment: C: Limma vs GEE
11.2 years ago Aaron Mackey ▴ 200
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Comment: C: RSEM for transcript and gene level read count and edgeR differential expression
11.3 years ago Aaron Mackey ▴ 200
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RNAseq analyses: to use, or not use, all the samples; that's the question.
PROcess edgeR DESeq PROcess edgeR DESeq
11.6 years ago Aaron Mackey ▴ 200
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Comment: C: mcmapply with edgeR?
12.3 years ago Aaron Mackey ▴ 200
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1.0k
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mcmapply with edgeR?
edgeR edgeR
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 200
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2.4k
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Comment: C: 'SRAdb useful for visualizing BAM files'
14.6 years ago Aaron Mackey ▴ 200
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2.4k
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Comment: C: 'SRAdb useful for visualizing BAM files'
14.6 years ago Aaron Mackey ▴ 200
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2.4k
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Comment: C: 'SRAdb useful for visualizing BAM files'
14.6 years ago Aaron Mackey ▴ 200
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1.5k
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Comment: C: help with biomart
15.0 years ago Aaron Mackey ▴ 200
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1
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1.5k
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Comment: C: help with biomart
15.0 years ago Aaron Mackey ▴ 200
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