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how to build a new crlmm CDF annotation package?
crlmm annotation
10.9 years ago Aaron Mackey ▴ 200
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4.0k
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Comment: C: limma, analysis on subset of data gives completely different results
11.4 years ago Aaron Mackey ▴ 200
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3.2k
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Comment: C: total count filter cutoff
11.6 years ago Aaron Mackey ▴ 200
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1.9k
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Comment: C: edgeR
11.7 years ago Aaron Mackey ▴ 200
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1.9k
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Comment: C: edgeR
11.7 years ago Aaron Mackey ▴ 200
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Comment: C: Designing a model with blocking and other interactions
11.7 years ago Aaron Mackey ▴ 200
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B score-like posterior log-odds for edgeR topTags?
11.8 years ago Aaron Mackey ▴ 200
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3.9k
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Comment: C: Odd contrast; does it make statistical sense?
11.9 years ago Aaron Mackey ▴ 200
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3.9k
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Comment: C: Odd contrast; does it make statistical sense?
11.9 years ago Aaron Mackey ▴ 200
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3.2k
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scholarly reference for "don't draw PCA/heatmap dendrograms on DEGs"
Clustering Clustering
updated 12.0 years ago by ★ 1.6k • written 12.0 years ago by ▴ 200
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Comment: C: scholarly reference for "don't draw PCA/heatmap dendrograms on DEGs"
12.0 years ago Aaron Mackey ▴ 200
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1.8k
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Comment: C: Limma vs GEE
12.2 years ago Aaron Mackey ▴ 200
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Comment: C: RSEM for transcript and gene level read count and edgeR differential expression
12.3 years ago Aaron Mackey ▴ 200
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RNAseq analyses: to use, or not use, all the samples; that's the question.
PROcess edgeR DESeq PROcess edgeR DESeq
12.6 years ago Aaron Mackey ▴ 200
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Comment: C: mcmapply with edgeR?
13.3 years ago Aaron Mackey ▴ 200
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1.3k
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mcmapply with edgeR?
edgeR edgeR
updated 13.3 years ago by 25k • written 13.3 years ago by ▴ 200
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2.9k
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Comment: C: 'SRAdb useful for visualizing BAM files'
15.7 years ago Aaron Mackey ▴ 200
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2.9k
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Comment: C: 'SRAdb useful for visualizing BAM files'
15.7 years ago Aaron Mackey ▴ 200
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2.9k
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Comment: C: 'SRAdb useful for visualizing BAM files'
15.7 years ago Aaron Mackey ▴ 200
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1.8k
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Comment: C: help with biomart
16.0 years ago Aaron Mackey ▴ 200
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1
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1.8k
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Comment: C: help with biomart
16.0 years ago Aaron Mackey ▴ 200
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