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736
views
how to cluster transcripts of one gene
12.8 years ago
wang peter
★ 2.0k
0
votes
1
reply
834
views
a problem to install bioconductor on 2.14
updated 12.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.9 years ago by
wang peter
★ 2.0k
0
votes
1
reply
871
views
how to update DEseq package on windows?
DESeq
DESeq
updated 12.9 years ago by
delhomme@embl.de
★ 1.2k • written 12.9 years ago by
wang peter
★ 2.0k
0
votes
3
replies
3.6k
views
how to set library size in DESeq?
updated 12.9 years ago by
Simon Anders
★ 3.8k • written 12.9 years ago by
wang peter
★ 2.0k
0
votes
1
reply
3.6k
views
Comment:
C: how to set library size in DESeq?
12.9 years ago
wang peter
★ 2.0k
0
votes
1
reply
890
views
about library size and length of gene information in DEseq
edgeR
DESeq
edgeR
DESeq
updated 12.9 years ago by
Wolfgang Huber
★ 13k • written 12.9 years ago by
wang peter
★ 2.0k
0
votes
0
replies
872
views
report a possible bug of edgeR
12.9 years ago
wang peter
★ 2.0k
0
votes
0
replies
807
views
edgeR for paired-end and strand specific data
edgeR
edgeR
12.9 years ago
wang peter
★ 2.0k
0
votes
0
replies
2.7k
views
Answer:
A: DESeq on transcripts v/s genes
12.9 years ago
wang peter
★ 2.0k
0
votes
1
reply
684
views
how to replace NA by 1
updated 12.9 years ago by
Sean Davis
21k • written 12.9 years ago by
wang peter
★ 2.0k
0
votes
3
replies
1.1k
views
is matchPattern faster?
updated 12.9 years ago by
Harris A. Jaffee
▴ 590 • written 12.9 years ago by
wang peter
★ 2.0k
0
votes
2
replies
979
views
a question about trimLRPatterns?
PROcess
PROcess
updated 12.9 years ago by
Harris A. Jaffee
▴ 590 • written 12.9 years ago by
wang peter
★ 2.0k
0
votes
1
reply
821
views
how to solve the memory problem
updated 13.0 years ago by
Sean Davis
21k • written 13.0 years ago by
wang peter
★ 2.0k
0
votes
0
replies
1.5k
views
Comment:
C: about the quality score
13.0 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.5k
views
Comment:
C: about the quality score
13.0 years ago
wang peter
★ 2.0k
0
votes
4
replies
1.5k
views
about the quality score
updated 13.0 years ago by
Martin Morgan
25k • written 13.0 years ago by
wang peter
★ 2.0k
0
votes
8
replies
43k
views
how to set R memory limit
updated 13.0 years ago by
Sunny Yu Liu
▴ 80 • written 13.0 years ago by
wang peter
★ 2.0k
0
votes
1
reply
685
views
a question about how to use ChIPseqR
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.0 years ago by
wang peter
★ 2.0k
0
votes
0
replies
1.2k
views
Answer:
A: Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2
13.0 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.0k
views
how to use bioconductor to download all virus sequence from ncbi
updated 13.0 years ago by
Sean Davis
21k • written 13.0 years ago by
wang peter
★ 2.0k
0
votes
1
reply
1.7k
views
Answer:
A: deqseq_count and BWA-based SAM files
13.0 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.7k
views
total number of reads? mapped reads? or total counts?
edgeR
edgeR
updated 13.0 years ago by
Mark Robinson
▴ 880 • written 13.0 years ago by
wang peter
★ 2.0k
0
votes
0
replies
842
views
Answer:
A: Should I compute RMA expression measures separately for different treament group
13.1 years ago
wang peter
★ 2.0k
1
vote
1
reply
1.4k
views
how to match a regular expression to XString, XStringViews or MaskedXString object
updated 13.1 years ago by
Harris A. Jaffee
▴ 590 • written 13.1 years ago by
wang peter
★ 2.0k
0
votes
0
replies
767
views
Comment:
C: Probe level normalization
13.1 years ago
wang peter
★ 2.0k
0
votes
1
reply
927
views
fasta sequence is too long to be read
updated 13.1 years ago by
Steve Lianoglou
★ 13k • written 13.1 years ago by
wang peter
★ 2.0k
0
votes
1
reply
690
views
gaoshan
updated 13.1 years ago by
Martin Morgan
25k • written 13.1 years ago by
wang peter
★ 2.0k
0
votes
0
replies
630
views
how to remove redundant or error in transcripsome
13.1 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.0k
views
the procedure to annotate assembled transcriptom
annotate
genomes
annotate
genomes
updated 13.1 years ago by
Sean Davis
21k • written 13.1 years ago by
wang peter
★ 2.0k
0
votes
2
replies
1.1k
views
bam or sam for counting
updated 13.2 years ago by
Sean Davis
21k • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
1
reply
1.6k
views
an error to open bam file
updated 13.2 years ago by
Martin Morgan
25k • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
1
reply
1.3k
views
how to use writeFASTA
ShortRead
ShortRead
updated 13.2 years ago by
Martin Morgan
25k • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
10
replies
1.6k
views
any package to do gene expression value estimation
updated 13.2 years ago by
Wei Shi
★ 3.6k • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
1
reply
1.6k
views
Comment:
C: any package to do gene expression value estimation
13.2 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.6k
views
Comment:
C: any package to do gene expression value estimation
13.2 years ago
wang peter
★ 2.0k
0
votes
2
replies
1.6k
views
Comment:
C: any package to do gene expression value estimation
13.2 years ago
wang peter
★ 2.0k
0
votes
0
replies
630
views
how to check paired end data
13.2 years ago
wang peter
★ 2.0k
0
votes
0
replies
700
views
how to define a forward or reverse read file
13.2 years ago
wang peter
★ 2.0k
0
votes
1
reply
805
views
report a problem
updated 13.2 years ago by
Harris A. Jaffee
▴ 590 • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
1
reply
797
views
still the trimLRPatterns problem
updated 13.2 years ago by
Harris A. Jaffee
▴ 590 • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
1
reply
652
views
how to deal with Fastq file more than 30G
updated 13.2 years ago by
Steve Lianoglou
★ 13k • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
5
replies
6.9k
views
how to update a bioconductor package
updated 13.2 years ago by
Hervé Pagès
16k • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
2
replies
1.4k
views
the same problem happened
Biostrings
Biostrings
updated 13.2 years ago by
Sean Davis
21k • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
3
replies
1.0k
views
how to deal with a 30G fastq file
updated 13.2 years ago by
Martin Morgan
25k • written 13.2 years ago by
wang peter
★ 2.0k
0
votes
0
replies
270
views
how to apply for a member in bioconductor maillist
13.2 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.3k
views
Comment:
C: [Bioc-sig-seq] first remove low quality or adaptor
13.3 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.3k
views
Answer:
A: [Bioc-sig-seq] first remove low quality or adaptor
13.3 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.3k
views
why kOverA function has 6
affycoretools
affycoretools
updated 13.6 years ago by
Gang Chen
▴ 20 • written 13.6 years ago by
wang peter
★ 2.0k
198 results • Page
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