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669
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how to cluster transcripts of one gene
12.3 years ago wang peter ★ 2.0k
0
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1
reply
779
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a problem to install bioconductor on 2.14
updated 12.4 years ago by 6.7k • written 12.4 years ago by ★ 2.0k
0
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1
reply
812
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how to update DEseq package on windows?
DESeq DESeq
updated 12.4 years ago by ★ 1.2k • written 12.4 years ago by ★ 2.0k
0
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3
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3.4k
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how to set library size in DESeq?
updated 12.4 years ago by ★ 3.7k • written 12.4 years ago by ★ 2.0k
0
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1
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3.4k
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Comment: C: how to set library size in DESeq?
12.4 years ago wang peter ★ 2.0k
0
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1
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838
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about library size and length of gene information in DEseq
edgeR DESeq edgeR DESeq
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ★ 2.0k
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0
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804
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report a possible bug of edgeR
12.4 years ago wang peter ★ 2.0k
0
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0
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748
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edgeR for paired-end and strand specific data
edgeR edgeR
12.4 years ago wang peter ★ 2.0k
0
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0
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2.5k
views
Answer: A: DESeq on transcripts v/s genes
12.4 years ago wang peter ★ 2.0k
0
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1
reply
596
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how to replace NA by 1
updated 12.4 years ago by 21k • written 12.4 years ago by ★ 2.0k
0
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3
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964
views
is matchPattern faster?
updated 12.4 years ago by ▴ 590 • written 12.4 years ago by ★ 2.0k
0
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2
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870
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a question about trimLRPatterns?
PROcess PROcess
updated 12.4 years ago by ▴ 590 • written 12.4 years ago by ★ 2.0k
0
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1
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733
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how to solve the memory problem
updated 12.5 years ago by 21k • written 12.5 years ago by ★ 2.0k
0
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0
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1.4k
views
Comment: C: about the quality score
12.5 years ago wang peter ★ 2.0k
0
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1
reply
1.4k
views
Comment: C: about the quality score
12.5 years ago wang peter ★ 2.0k
0
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4
replies
1.4k
views
about the quality score
updated 12.5 years ago by 25k • written 12.5 years ago by ★ 2.0k
0
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8
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41k
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how to set R memory limit
updated 12.5 years ago by ▴ 80 • written 12.5 years ago by ★ 2.0k
0
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1
reply
646
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a question about how to use ChIPseqR
updated 12.5 years ago by ★ 6.8k • written 12.5 years ago by ★ 2.0k
0
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0
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1.1k
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Answer: A: Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2
12.5 years ago wang peter ★ 2.0k
0
votes
1
reply
961
views
how to use bioconductor to download all virus sequence from ncbi
updated 12.5 years ago by 21k • written 12.5 years ago by ★ 2.0k
0
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1
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1.5k
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Answer: A: deqseq_count and BWA-based SAM files
12.5 years ago wang peter ★ 2.0k
0
votes
1
reply
1.6k
views
total number of reads? mapped reads? or total counts?
edgeR edgeR
updated 12.5 years ago by ▴ 880 • written 12.5 years ago by ★ 2.0k
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0
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768
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Answer: A: Should I compute RMA expression measures separately for different treament group
12.6 years ago wang peter ★ 2.0k
1
vote
1
reply
1.3k
views
how to match a regular expression to XString, XStringViews or MaskedXString object
updated 12.6 years ago by ▴ 590 • written 12.6 years ago by ★ 2.0k
0
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0
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711
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Comment: C: Probe level normalization
12.6 years ago wang peter ★ 2.0k
0
votes
1
reply
869
views
fasta sequence is too long to be read
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ★ 2.0k
0
votes
1
reply
644
views
gaoshan
updated 12.6 years ago by 25k • written 12.6 years ago by ★ 2.0k
0
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0
replies
542
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how to remove redundant or error in transcripsome
12.6 years ago wang peter ★ 2.0k
0
votes
1
reply
960
views
the procedure to annotate assembled transcriptom
annotate genomes annotate genomes
updated 12.6 years ago by 21k • written 12.6 years ago by ★ 2.0k
0
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2
replies
971
views
bam or sam for counting
updated 12.7 years ago by 21k • written 12.7 years ago by ★ 2.0k
0
votes
1
reply
1.5k
views
an error to open bam file
updated 12.7 years ago by 25k • written 12.7 years ago by ★ 2.0k
0
votes
1
reply
1.2k
views
how to use writeFASTA
ShortRead ShortRead
updated 12.7 years ago by 25k • written 12.7 years ago by ★ 2.0k
0
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10
replies
1.4k
views
any package to do gene expression value estimation
updated 12.7 years ago by ★ 3.6k • written 12.7 years ago by ★ 2.0k
0
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1
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1.4k
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Comment: C: any package to do gene expression value estimation
12.7 years ago wang peter ★ 2.0k
0
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1
reply
1.4k
views
Comment: C: any package to do gene expression value estimation
12.7 years ago wang peter ★ 2.0k
0
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2
replies
1.4k
views
Comment: C: any package to do gene expression value estimation
12.7 years ago wang peter ★ 2.0k
0
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0
replies
578
views
how to check paired end data
12.7 years ago wang peter ★ 2.0k
0
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0
replies
637
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how to define a forward or reverse read file
12.7 years ago wang peter ★ 2.0k
0
votes
1
reply
707
views
report a problem
updated 12.7 years ago by ▴ 590 • written 12.7 years ago by ★ 2.0k
0
votes
1
reply
711
views
still the trimLRPatterns problem
updated 12.7 years ago by ▴ 590 • written 12.7 years ago by ★ 2.0k
0
votes
1
reply
604
views
how to deal with Fastq file more than 30G
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ★ 2.0k
0
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5
replies
6.7k
views
how to update a bioconductor package
updated 12.7 years ago by 16k • written 12.7 years ago by ★ 2.0k
0
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2
replies
1.3k
views
the same problem happened
Biostrings Biostrings
updated 12.7 years ago by 21k • written 12.7 years ago by ★ 2.0k
0
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3
replies
947
views
how to deal with a 30G fastq file
updated 12.7 years ago by 25k • written 12.7 years ago by ★ 2.0k
0
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0
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210
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how to apply for a member in bioconductor maillist
12.7 years ago wang peter ★ 2.0k
0
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1
reply
1.2k
views
Comment: C: [Bioc-sig-seq] first remove low quality or adaptor
12.8 years ago wang peter ★ 2.0k
0
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1
reply
1.2k
views
Answer: A: [Bioc-sig-seq] first remove low quality or adaptor
12.8 years ago wang peter ★ 2.0k
0
votes
1
reply
1.2k
views
why kOverA function has 6
affycoretools affycoretools
updated 13.1 years ago by ▴ 20 • written 13.1 years ago by ★ 2.0k
198 results • Page 4 of 4
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