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Showing :
questions
0
votes
0
replies
877
views
how to set parameter of DESeq function estimateDispersions
DESeq
DESeq
11.8 years ago
wang peter
★ 2.0k
0
votes
0
replies
681
views
how to do GO analysis if i have some sequences
Annotation
GO
annotate
Annotation
GO
annotate
11.8 years ago
wang peter
★ 2.0k
0
votes
2
replies
874
views
a warining from edgeR
updated 11.8 years ago by
Gordon Smyth
50k • written 11.8 years ago by
wang peter
★ 2.0k
0
votes
3
replies
1.2k
views
a possible bug in DESeq
11.8 years ago
wang peter
★ 2.0k
0
votes
3
replies
2.0k
views
how to design a model matrix and test by edgeR
updated 11.8 years ago by
Gordon Smyth
50k • written 11.8 years ago by
wang peter
★ 2.0k
0
votes
3
replies
1.2k
views
how to count for edgeR input
edgeR
edgeR
updated 11.8 years ago by
alessandro.guffanti@genomnia.com
▴ 330 • written 11.8 years ago by
wang peter
★ 2.0k
0
votes
0
replies
556
views
any package can map transcripts to GO
11.8 years ago
wang peter
★ 2.0k
0
votes
3
replies
913
views
how to design comparision using edgeR
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
wang peter
★ 2.0k
0
votes
0
replies
908
views
DESeq and contrasts
11.9 years ago
wang peter
★ 2.0k
0
votes
0
replies
1.1k
views
how to design model in DESeq
DESeq
DESeq
11.9 years ago
wang peter
★ 2.0k
0
votes
2
replies
1.6k
views
what is the default parameters of estimateDispersions in the DESeq
updated 11.9 years ago by
James W. MacDonald
65k • written 11.9 years ago by
wang peter
★ 2.0k
3
votes
2
replies
12k
views
how to get normalized counts from edgeR
DESeq
DESeq
updated 11.9 years ago by
Mark Robinson
▴ 880 • written 11.9 years ago by
wang peter
★ 2.0k
0
votes
1
reply
592
views
report a possible buy in edgeR
updated 11.9 years ago by
Mark Robinson
▴ 880 • written 11.9 years ago by
wang peter
★ 2.0k
0
votes
3
replies
1.1k
views
report a problem of DESeq
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
wang peter
★ 2.0k
0
votes
0
replies
1.1k
views
about edgeR
Regression
Regression
11.9 years ago
wang peter
★ 2.0k
0
votes
0
replies
636
views
design matrix edge R pairwise comparison at different timepoints after infection with replicates
11.9 years ago
wang peter
★ 2.0k
0
votes
0
replies
771
views
shangao
11.9 years ago
wang peter
★ 2.0k
0
votes
0
replies
976
views
how to design a model matrix
12.0 years ago
wang peter
★ 2.0k
0
votes
6
replies
9.9k
views
how to design matrix by edgeR
updated 12.0 years ago by
Gordon Smyth
50k • written 12.0 years ago by
wang peter
★ 2.0k
0
votes
1
reply
607
views
how to get plant taxonomy
updated 12.0 years ago by
Wang, Li
▴ 180 • written 12.0 years ago by
wang peter
★ 2.0k
0
votes
2
replies
564
views
how to get mismatch or gap from pairwiseAlignment
updated 12.1 years ago by
Hervé Pagès
16k • written 12.1 years ago by
wang peter
★ 2.0k
0
votes
6
replies
2.7k
views
how to deal with fasta "line is too long"
updated 12.1 years ago by
Marcus Davy
▴ 390 • written 12.1 years ago by
wang peter
★ 2.0k
0
votes
1
reply
755
views
biomaRt cannot find getAffyArrays function
updated 12.2 years ago by
Sean Davis
21k • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
1
reply
1.0k
views
how to write fasta file of RNA sequences
updated 12.2 years ago by
Steve Lianoglou
★ 13k • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
12
replies
2.3k
views
how to map Affymetrix ID to ensemble gene ID
updated 12.2 years ago by
Sean Davis
21k • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
3
replies
931
views
an error from ShortRead
updated 12.2 years ago by
Marcus Davy
▴ 390 • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
1
reply
1.8k
views
an erro related with RNAStringSet
updated 12.2 years ago by
Hervé Pagès
16k • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
6
replies
1.4k
views
any good R package to scan microRNA target?
microRNA
microRNA
updated 12.2 years ago by
Steve Lianoglou
★ 13k • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
8
replies
1.8k
views
how to get pig genome and for miRNA target scan
miRNA
miRNA
12.2 years ago
wang peter
★ 2.0k
0
votes
1
reply
828
views
a problem with trimLRPatterns
updated 12.2 years ago by
Harris A. Jaffee
▴ 590 • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
4
replies
857
views
a possible bug of trimLRPatterns
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
3
replies
866
views
how to read empty line in the fastqfile
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
4
replies
1.3k
views
A problem about trimLRPatterns
microRNA
microRNA
updated 12.2 years ago by
Harris A. Jaffee
▴ 590 • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
1
reply
652
views
report a possible bug of
ShortRead
ShortRead
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
wang peter
★ 2.0k
0
votes
0
replies
658
views
how to cluster transcripts of one gene
12.2 years ago
wang peter
★ 2.0k
0
votes
1
reply
766
views
a problem to install bioconductor on 2.14
updated 12.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.3 years ago by
wang peter
★ 2.0k
0
votes
1
reply
801
views
how to update DEseq package on windows?
DESeq
DESeq
updated 12.3 years ago by
delhomme@embl.de
★ 1.2k • written 12.3 years ago by
wang peter
★ 2.0k
0
votes
3
replies
3.4k
views
how to set library size in DESeq?
updated 12.3 years ago by
Simon Anders
★ 3.7k • written 12.3 years ago by
wang peter
★ 2.0k
0
votes
1
reply
827
views
about library size and length of gene information in DEseq
edgeR
DESeq
edgeR
DESeq
updated 12.3 years ago by
Wolfgang Huber
★ 13k • written 12.3 years ago by
wang peter
★ 2.0k
0
votes
0
replies
789
views
report a possible bug of edgeR
12.3 years ago
wang peter
★ 2.0k
0
votes
0
replies
733
views
edgeR for paired-end and strand specific data
edgeR
edgeR
12.3 years ago
wang peter
★ 2.0k
0
votes
1
reply
585
views
how to replace NA by 1
updated 12.3 years ago by
Sean Davis
21k • written 12.3 years ago by
wang peter
★ 2.0k
0
votes
3
replies
940
views
is matchPattern faster?
updated 12.3 years ago by
Harris A. Jaffee
▴ 590 • written 12.3 years ago by
wang peter
★ 2.0k
0
votes
2
replies
854
views
a question about trimLRPatterns?
PROcess
PROcess
updated 12.3 years ago by
Harris A. Jaffee
▴ 590 • written 12.3 years ago by
wang peter
★ 2.0k
0
votes
1
reply
716
views
how to solve the memory problem
updated 12.3 years ago by
Sean Davis
21k • written 12.4 years ago by
wang peter
★ 2.0k
0
votes
4
replies
1.4k
views
about the quality score
updated 12.4 years ago by
Martin Morgan
25k • written 12.4 years ago by
wang peter
★ 2.0k
0
votes
8
replies
41k
views
how to set R memory limit
updated 12.4 years ago by
Sunny Yu Liu
▴ 80 • written 12.4 years ago by
wang peter
★ 2.0k
0
votes
1
reply
639
views
a question about how to use ChIPseqR
updated 12.4 years ago by
Valerie Obenchain
★ 6.8k • written 12.4 years ago by
wang peter
★ 2.0k
0
votes
1
reply
947
views
how to use bioconductor to download all virus sequence from ncbi
updated 12.4 years ago by
Sean Davis
21k • written 12.4 years ago by
wang peter
★ 2.0k
0
votes
1
reply
1.6k
views
total number of reads? mapped reads? or total counts?
edgeR
edgeR
updated 12.4 years ago by
Mark Robinson
▴ 880 • written 12.4 years ago by
wang peter
★ 2.0k
119 results • Page
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