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249
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Comment: Comment: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
4 weeks ago Sean Davis 21k
0
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0
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279
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Comment: Comment: Converting Probe IDs to HGNC symbols
4 weeks ago Sean Davis 21k
1
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1
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533
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Comment: Comment: Guitar R package requires update due to dependency GenomicFeatures
4 weeks ago Sean Davis 21k
1
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1
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279
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Answer: Answer: Converting Probe IDs to HGNC symbols
4 weeks ago Sean Davis 21k
0
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0
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770
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Comment: Comment: Web accessibility of Bioconductor.org
11 months ago Sean Davis 21k
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0
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1.7k
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Comment: Comment: Generating Gene Expression Levels from TSV files on GEO
19 months ago Sean Davis 21k
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1
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1.7k
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Answer: Answer: Generating Gene Expression Levels from TSV files on GEO
19 months ago Sean Davis 21k
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1
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1.6k
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Comment: Comment: Research Project - Expanding search funtionality on the GEO database
19 months ago Sean Davis 21k
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1
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1.6k
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Comment: Comment: Research Project - Expanding search funtionality on the GEO database
19 months ago Sean Davis 21k
0
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0
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1.6k
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Comment: Comment: Research Project - Expanding search funtionality on the GEO database
19 months ago Sean Davis 21k
1
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1
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3.8k
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Answer: Answer: Issues with installing Bioconductor packages (eg GEOquery)
20 months ago Sean Davis 21k
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0
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1.6k
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Comment: Comment: lfcSE always positive. Does this make sense?
2.1 years ago Sean Davis 21k
0
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0
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4.9k
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Comment: Comment: strange results from differential methylation analysis using limma
3.7 years ago Sean Davis 21k
0
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1
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4.0k
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Comment: Comment: GEO series matrix empty
3.9 years ago Sean Davis 21k
1
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1
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4.0k
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Comment: Comment: GEO series matrix empty
4.0 years ago Sean Davis 21k
0
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0
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2.3k
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Comment: Comment: Reading large file (15GB) in R
4.0 years ago Sean Davis 21k
1
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1
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4.0k
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Comment: Comment: GEO series matrix empty
4.0 years ago Sean Davis 21k
0
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1
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2.3k
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Comment: Comment: Reading large file (15GB) in R
4.0 years ago Sean Davis 21k
0
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1
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1.4k
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Comment: Comment: Error in loading data set
4.0 years ago Sean Davis 21k
0
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0
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1.9k
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Comment: Comment: GEOquery returning NAs as probe names
4.1 years ago Sean Davis 21k
0
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1
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6.1k
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Comment: Comment: GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
4.2 years ago Sean Davis 21k
0
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1
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5.4k
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Comment: Comment: Installing Bioconductor
4.2 years ago Sean Davis 21k
0
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2
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6.1k
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Comment: Comment: GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
4.2 years ago Sean Davis 21k
0
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0
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4.1k
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Comment: Comment: GEO RNASeq data query
4.2 years ago Sean Davis 21k
0
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1
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6.1k
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Answer: Answer: GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
4.2 years ago Sean Davis 21k
0
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1
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6.1k
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Comment: Comment: GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
4.2 years ago Sean Davis 21k
0
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1
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6.1k
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Comment: Comment: GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
4.2 years ago Sean Davis 21k
1
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0
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2.0k
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Answer: Answer: How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
4.2 years ago Sean Davis 21k
1
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1
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2.3k
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Comment: Comment: 2 questions: why there is nothing for file_ids? How could I generate a manifest
4.5 years ago Sean Davis 21k
1
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1
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2.3k
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Answer: Answer: 2 questions: why there is nothing for file_ids? How could I generate a manifest
4.5 years ago Sean Davis 21k
0
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1
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7.5k
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Comment: Comment: Accessing Public Genomic Data from Bioconductor
4.6 years ago Sean Davis 21k
0
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0
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2.5k
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Answer: Answer: unable to find an inherited method for function ‘Table’ for signature ‘"GSE"
4.6 years ago Sean Davis 21k
7
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5
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7.5k
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Tutorial: Accessing Public Genomic Data from Bioconductor
geoquery geometadb sradb Tutorial
written 10.7 years ago by 21k
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0
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2.1k
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Comment: Comment: when using getGEO() from GEOquery, an error happened : a file does not exist
5.0 years ago Sean Davis 21k
1
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0
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2.1k
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Answer: Answer: when using getGEO() from GEOquery, an error happened : a file does not exist
5.0 years ago Sean Davis 21k
0
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1
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2.1k
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Comment: Comment: when using getGEO() from GEOquery, an error happened : a file does not exist
5.0 years ago Sean Davis 21k
0
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0
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2.3k
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Comment: C: GEOquery: preprocessing log of imported data
5.7 years ago Sean Davis 21k
4
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1
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2.3k
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Answer: A: GEOquery: preprocessing log of imported data
5.7 years ago Sean Davis 21k
0
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1
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2.0k
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Comment: C: Annotation issue while analyzing processed Affymetrix Human Exon 1.0 ST Arrays f
5.9 years ago Sean Davis 21k
0
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0
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1.5k
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Answer: A: Annotation Using GEOquery
6.2 years ago Sean Davis 21k
0
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0
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1.5k
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Comment: C: Annotation Using GEOquery
6.2 years ago Sean Davis 21k
0
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0
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1.7k
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Comment: C: GEOquery and Feature data
6.2 years ago Sean Davis 21k
1
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0
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2.5k
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Answer: A: Downloading a private GEO with GEOquery
6.3 years ago Sean Davis 21k
1
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0
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2.1k
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Answer: A: TCGA MAF (Mutations) data
6.7 years ago Sean Davis 21k
0
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0
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4.5k
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Comment: C: GEOquery: HTTP error 403
6.8 years ago Sean Davis 21k
1
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0
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4.5k
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Comment: C: GEOquery: HTTP error 403
6.8 years ago Sean Davis 21k
0
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0
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4.5k
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Comment: C: GEOquery: HTTP error 403
6.8 years ago Sean Davis 21k
2
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1
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1.7k
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Answer: A: GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
7.0 years ago Sean Davis 21k
0
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0
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2.0k
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Comment: C: edgeR. Known cancer genes are not differentially expressed?
7.2 years ago Sean Davis 21k
1
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1
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2.7k
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Comment: C: geGeo error - Error in .subset2(x, i) : subscript out of bounds
7.2 years ago Sean Davis 21k
2,197 results • Page 1 of 44
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