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Comment: Comment: between lane normalization upper quantile
7 months ago davide risso ▴ 980
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7.9k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
10 months ago davide risso ▴ 980
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1.4k
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Answer: Answer: EDASeq normalization: genes with 0 counts
3.7 years ago davide risso ▴ 980
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1.9k
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Comment: Comment: RUVSeq package for adjusting two variables of interest
3.7 years ago davide risso ▴ 980
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2.1k
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Comment: Comment: ZINB-WaVE-DESeq2 with Bulk Data: Choice of Epsilon value, K and gene number
3.7 years ago davide risso ▴ 980
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1.9k
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Comment: Comment: RUVSeq package for adjusting two variables of interest
3.7 years ago davide risso ▴ 980
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1
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1.9k
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Comment: Comment: RUVSeq package for adjusting two variables of interest
3.7 years ago davide risso ▴ 980
0
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1
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2.1k
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Answer: Answer: ZINB-WaVE-DESeq2 with Bulk Data: Choice of Epsilon value, K and gene number
3.7 years ago davide risso ▴ 980
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1
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2.1k
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Answer: A: How to work with duplicates calculating the differentially expressed genes in Ps
4.1 years ago davide risso ▴ 980
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1
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1.6k
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Comment: C: Latent factors for differential expression
4.3 years ago davide risso ▴ 980
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3.4k
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Answer: A: cmdscale() error: NA values not allowed in 'd', ask for help.
4.3 years ago davide risso ▴ 980
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1
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1.8k
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Answer: A: Should I use RUVseq on raw counts or on normalized counts coming from EDASeq pac
5.0 years ago davide risso ▴ 980
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0
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2.8k
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Answer: A: Error: row names supplied are of the wrong length in RUVSeq
5.4 years ago davide risso ▴ 980
1
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1
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2.5k
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Comment: C: Upper-quartile normalization before RUVg normalization?
5.4 years ago davide risso ▴ 980
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1
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2.5k
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Answer: A: Upper-quartile normalization before RUVg normalization?
5.4 years ago davide risso ▴ 980
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1
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2.5k
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Comment: C: Using RUVSeq RUVs() to perform batch correction using technical replicates
5.7 years ago davide risso ▴ 980
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0
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2.5k
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Comment: C: normalized counts from RUVg run: is further library size normalization needed?
5.7 years ago davide risso ▴ 980
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2
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1.9k
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Answer: A: How to best represent weights in SummarizedExperiment or SingleCellExperiment?
5.8 years ago davide risso ▴ 980
1
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1
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1.5k
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Answer: A: How to remove samples from EDAseq SeqExpressionSeq
5.8 years ago davide risso ▴ 980
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2.5k
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Comment: C: normalized counts from RUVg run: is further library size normalization needed?
5.9 years ago davide risso ▴ 980
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1
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2.5k
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Comment: C: normalized counts from RUVg run: is further library size normalization needed?
5.9 years ago davide risso ▴ 980
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1
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3.0k
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Comment: C: EDASeq, RUVSeq and edgeR together
5.9 years ago davide risso ▴ 980
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2
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2.5k
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Answer: A: normalized counts from RUVg run: is further library size normalization needed?
5.9 years ago davide risso ▴ 980
0
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1
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2.2k
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Answer: A: determine k during RUVSeq
6.0 years ago davide risso ▴ 980
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1
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3.0k
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Comment: C: EDASeq, RUVSeq and edgeR together
6.0 years ago davide risso ▴ 980
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1
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3.0k
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Comment: C: EDASeq, RUVSeq and edgeR together
6.0 years ago davide risso ▴ 980
3
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1
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1.5k
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Answer: A: nbinomLRT function all cores usage
6.0 years ago davide risso ▴ 980
1
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1
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3.0k
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Answer: A: EDASeq, RUVSeq and edgeR together
6.1 years ago davide risso ▴ 980
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0
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1.7k
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Comment: C: Global expression shift using RUVSeq
6.3 years ago davide risso ▴ 980
2
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1
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1.7k
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Answer: A: Global expression shift using RUVSeq
6.3 years ago davide risso ▴ 980
1
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1
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4.2k
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Comment: C: Merging RNAseq Datasets of Different Depths
6.3 years ago davide risso ▴ 980
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0
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925
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Comment: C: meanVarPlot Ignores Sample Total Count Differences
6.3 years ago davide risso ▴ 980
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0
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1.1k
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Answer: A: Mean-Variance Plot for Normalised Counts
6.3 years ago davide risso ▴ 980
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0
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24k
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Comment: C: use EDAseq normalized data as input of DESeq2
6.4 years ago davide risso ▴ 980
1
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0
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24k
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Comment: C: use EDAseq normalized data as input of DESeq2
6.4 years ago davide risso ▴ 980
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0
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24k
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Answer: A: use EDAseq normalized data as input of DESeq2
6.4 years ago davide risso ▴ 980
1
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0
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2.4k
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Answer: A: Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
6.4 years ago davide risso ▴ 980
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0
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1.1k
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Answer: A: Workflow Perraudeau F1000 - Bioconductor workflow for scRNA-seq
6.6 years ago davide risso ▴ 980
2
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0
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9.8k
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Answer: A: Error: In seq_len(ncol(assay)) : first element used of 'length.out' argument
6.7 years ago davide risso ▴ 980
2
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1
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2.2k
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Answer: A: RUVg with differential transcript expression?
6.8 years ago davide risso ▴ 980
5
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1
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3.6k
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Answer: A: Incorporating RUVSeq factors of unwanted variation in DESeq2 time course analysi
6.9 years ago davide risso ▴ 980
1
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1
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2.7k
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Answer: A: getGeneLengthAndGCContent: "zero or more than one input sequence"
6.9 years ago davide risso ▴ 980
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2
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2.7k
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Comment: C: getGeneLengthAndGCContent: "zero or more than one input sequence"
6.9 years ago davide risso ▴ 980
1
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1
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3.5k
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Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
6.9 years ago davide risso ▴ 980
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2
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3.5k
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Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
6.9 years ago davide risso ▴ 980
1
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1
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3.5k
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Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
6.9 years ago davide risso ▴ 980
1
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1
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3.5k
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Answer: A: Error and weird result of TCGAanalyze_Normalization function using the R package
6.9 years ago davide risso ▴ 980
1
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0
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1.6k
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Answer: A: Outputting batch-effect free normalized counts
6.9 years ago davide risso ▴ 980
0
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1
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1.8k
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Comment: C: From RleList to RleArray
7.0 years ago davide risso ▴ 980
7
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4
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1.8k
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From RleList to RleArray
delayedarray rlelist rle
updated 7.0 years ago by ▴ 740 • written 7.0 years ago by ▴ 980
132 results • Page 1 of 3
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