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Showing :
delayedarray
•
reset
1
vote
3
replies
392
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
8 months ago • updated 7 months ago
Koki
▴ 10
4
votes
3
replies
369
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
10 months ago
Koki
▴ 10
2
votes
3
replies
384
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 11 months ago by
Hervé Pagès
15k • written 11 months ago by
Koki
▴ 10
3
votes
5
replies
459
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 11 months ago by
Hervé Pagès
15k • written 11 months ago by
Pedro Baldoni
▴ 10
0
votes
1
reply
201
views
Error in 1D DelayedArray, when the spacings is larger than 1
DelayedArray
11 months ago
Koki
▴ 10
0
votes
1
reply
244
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
12 months ago • updated 11 months ago
Koki
▴ 10
7
votes
8
replies
542
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 11 months ago by
Hervé Pagès
15k • written 12 months ago by
Pedro Baldoni
▴ 10
2
votes
4
replies
433
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
12 months ago
Koki
▴ 10
1
vote
2
replies
401
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
13 months ago
Koki
▴ 10
2
votes
6
replies
576
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 12 months ago by
Hervé Pagès
15k • written 13 months ago by
Koki
▴ 10
1
vote
1
reply
425
views
Problem installing DelayedArray
DelayedArray
updated 15 months ago by
Hervé Pagès
15k • written 15 months ago by
Dan Tenenbaum
★ 8.2k
5
votes
5
replies
386
views
Building an HDF5Array/DelayedArray object incrementally
delayedarray
updated 20 months ago by
James W. MacDonald
60k • written 20 months ago by
Stephen Piccolo
▴ 580
2
votes
8
replies
804
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray
warning
installation
updated 23 months ago by
Hervé Pagès
15k • written 23 months ago by
inzirio
▴ 10
1
vote
3
replies
886
views
Troubles with barcodeRanks()
DropletUtils
SingleCellExperiement
DelayedArray
simpleSingleCell
updated 3.0 years ago by
Aaron Lun
★ 27k • written 3.0 years ago by
Steve Pederson
▴ 170
2
votes
1
reply
588
views
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
scater
BiocSingular
DelayedArray
updated 3.0 years ago by
Aaron Lun
★ 27k • written 3.0 years ago by
kevin.rue
▴ 300
4
votes
3
replies
540
views
Best way of creating a large RleMatrix
DelayedArray
RleMatrix
updated 3.4 years ago by
Hervé Pagès
15k • written 3.5 years ago by
maltethodberg
▴ 140
8
votes
8
replies
814
views
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray
delayedmatrixstats
updated 3.6 years ago by
Peter Hickey
▴ 550 • written 3.6 years ago by
maltethodberg
▴ 140
0
votes
1
reply
583
views
DelayedArray install fails to UNC path
delayedarray
bug
installation
updated 3.8 years ago by
Martin Morgan
25k • written 3.9 years ago by
simon.andrews
• 0
0
votes
1
reply
884
views
Installation of package DelayedArray had non-zero exit status
delayedarray
3.8 years ago
cristoforo-grasso
• 0
2
votes
2
replies
650
views
how to combine multiple DelayedArray to a high dimension array
delayedarray
updated 4.2 years ago by
Peter Hickey
▴ 550 • written 4.2 years ago by
Ou, Jianhong
★ 1.3k
7
votes
4
replies
947
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 4.6 years ago by
Peter Hickey
▴ 550 • written 4.6 years ago by
davide risso
▴ 890
2
votes
6
replies
817
views
Plans for multicore block processing in DelayedArray?
delayedarray
updated 4.7 years ago by
Hervé Pagès
15k • written 4.7 years ago by
maltethodberg
▴ 140
4
votes
4
replies
671
views
remove NA's from a DelayedArray
delayedarray
updated 4.7 years ago by
Hervé Pagès
15k • written 4.7 years ago by
maltethodberg
▴ 140
0
votes
2
replies
806
views
rowsum or similar for RleArray?
delayedarray
rowsum
updated 4.7 years ago by
Hervé Pagès
15k • written 4.7 years ago by
maltethodberg
▴ 140
0
votes
1
reply
780
views
Error with dmrfinder bsseq after combining Bsseq obj
bsseq r package
dmrfinder
delayedarray
combine
4.9 years ago
br
• 0
1
vote
6
replies
960
views
Unusually long running times for getMeth function since latest release
bsseq
delayedarray
updated 4.9 years ago by
Peter Hickey
▴ 550 • written 4.9 years ago by
Alejandro Reyes
★ 1.8k
3
votes
8
replies
1.8k
views
Tutorial:
"developing" with HDF5Array
hdf5
DelayedArray
summarizedexperiment
Tutorial
5.3 years ago
Vincent J. Carey, Jr.
6.6k
27 results • Page
1 of 1
Recent ...
Replies
Comment: Italicise
by
Pau
• 0
They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
• 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
by
wahaha
• 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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