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rle
•
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1
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653
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deseq2 RLE normalization
RLE
normalization
deseq2
updated 8 months ago by
ATpoint
★ 3.6k • written 8 months ago by
SH
• 0
0
votes
1
reply
697
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.5 years ago by
Aaron Lun
★ 28k • written 3.5 years ago by
lklei001
• 0
0
votes
1
reply
1.5k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
f_pardow
• 0
0
votes
2
replies
1.0k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 5.4 years ago by
Valerie Obenchain
★ 6.8k • written 5.4 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
835
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
5.4 years ago
endrebak85
▴ 30
1
vote
1
reply
2.8k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
Aurora
▴ 20
1
vote
1
reply
945
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
5.6 years ago
hauken_heyken
▴ 80
7
votes
4
replies
1.4k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.1 years ago by
Peter Hickey
▴ 650 • written 6.1 years ago by
davide risso
▴ 930
2
votes
4
replies
1.2k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 5 months ago by
Hervé Pagès
16k • written 6.5 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
1.4k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
7.2 years ago
my4
▴ 10
0
votes
1
reply
1.5k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 7.4 years ago by
Michael Lawrence
11k • written 7.4 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
2.0k
views
how does coverage() works
biostrings
coverage
rle
iranges
7.5 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.3k
views
extract RLE normalized table
rle
normalization
table
updated 8.1 years ago by
Steve Lianoglou
13k • written 8.1 years ago by
aiko
• 0
3
votes
7
replies
1.9k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
gen
▴ 30
2
votes
6
replies
2.6k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
gen
▴ 30
2
votes
4
replies
1.7k
views
summing integer RLE
rle
list
irange
grangeslist
updated 8.7 years ago by
Chris Seidel
▴ 80 • written 8.7 years ago by
gen
▴ 30
1
vote
2
replies
1.0k
views
Summary statistics of RleListViews object
rle
Views
8.8 years ago
Sean Davis
21k
2
votes
5
replies
1.3k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
8.8 years ago
Janet Young
▴ 740
1
vote
1
reply
2.1k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 8.8 years ago by
Sean Davis
21k • written 8.8 years ago by
beverly893
▴ 10
0
votes
2
replies
1.1k
views
boxplot on an Rle object?
Rle
boxplot
8.8 years ago
Johannes Rainer
★ 2.0k
20 results • Page
1 of 1
Recent ...
Replies
Answer: Obtaining rsIDs with ENSG and variant ID information
by
Robert Castelo
★ 3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient
by
James W. MacDonald
64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Mike Smith
★ 6.2k
If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…
Comment: ClusterProfiler - enrichKEGG on specific pathways
by
EvaLan
• 0
Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Gordon Smyth
48k
That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…
Votes
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Answer: trying to add SingleR label to Seurat Object fails
Comment: DESeq2 - groups with biological replicates from the same patient
Answer: EdgeR: Exact test and glmQLFTest produce very different results
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★ 1.5k
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