Bioconductor Rle

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653

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RLE normalization deseq2

updated 8 months ago by ATpoint ★ 3.6k • written 8 months ago by SH • 0

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697

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S4 Rcpp InteractionSet IRanges Rle

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by lklei001 • 0

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1.5k

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deseq2 RLE

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by f_pardow • 0

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1.0k

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variantannotation VRanges R Rle

updated 5.4 years ago by Valerie Obenchain ★ 6.8k • written 5.4 years ago by Jayendra Shinde • 0

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835

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iranges s4vectors rle rlelist

5.4 years ago endrebak85 ▴ 30

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2.8k

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rle deseq2 normalization

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by Aurora ▴ 20

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945

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Rle Big data coverageByTranscript

5.6 years ago hauken_heyken ▴ 80

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1.4k

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delayedarray rlelist rle

updated 6.1 years ago by Peter Hickey ▴ 650 • written 6.1 years ago by davide risso ▴ 930

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1.2k

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DataFrame Rle generic expression table

updated 5 months ago by Hervé Pagès 16k • written 6.5 years ago by Charles Plessy ▴ 180

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1.4k

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Rle granges iranges

7.2 years ago my4 ▴ 10

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1.5k

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granges Rle coverage View mean

updated 7.4 years ago by Michael Lawrence 11k • written 7.4 years ago by Christian Ruckert ▴ 170

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2.0k

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biostrings coverage rle iranges

7.5 years ago likeeatingpizza ▴ 10

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1.3k

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rle normalization table

updated 8.1 years ago by Steve Lianoglou 13k • written 8.1 years ago by aiko • 0

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1.9k

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RLE GenomicFeatures rnaseq

updated 8.6 years ago by Hervé Pagès 16k • written 8.6 years ago by gen ▴ 30

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2.6k

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RLE iranges granges coverage

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by gen ▴ 30

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1.7k

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rle list irange grangeslist

updated 8.7 years ago by Chris Seidel ▴ 80 • written 8.7 years ago by gen ▴ 30

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1.0k

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rle Views

8.8 years ago Sean Davis 21k

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1.3k

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views iranges rle

8.8 years ago Janet Young ▴ 740

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2.1k

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affyPLM RLE NUSE

updated 8.8 years ago by Sean Davis 21k • written 8.8 years ago by beverly893 ▴ 10

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1.1k

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Rle boxplot

8.8 years ago Johannes Rainer ★ 2.0k

20 results • Page 1 of 1

Recent ...

Replies

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Mike Smith ★ 6.2k

If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…

Comment: ClusterProfiler - enrichKEGG on specific pathways by EvaLan • 0

Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k

That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…

Votes

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Answer: trying to add SingleR label to Seurat Object fails

Comment: DESeq2 - groups with biological replicates from the same patient

Answer: EdgeR: Exact test and glmQLFTest produce very different results

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k