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GenomicRanges RleList

11 months ago story.benjamin ▴ 20

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Views IRanges GRanges RleList

updated 4.4 years ago by Mike Smith ★ 6.6k • written 4.4 years ago by Assa Yeroslaviz ★ 1.5k

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iranges s4vectors rle rlelist

7.7 years ago endrebak85 ▴ 40

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bug genomicranges granges rlelist coverage

updated 8.1 years ago by Hervé Pagès 16k • written 8.1 years ago by xiaotong.yao23 ▴ 10

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delayedarray rlelist rle

updated 8.3 years ago by Peter Hickey ▴ 760 • written 8.3 years ago by davide risso ▴ 980

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genomicranges biocgenerics rlelist genomicvars iranges

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by Devin King ▴ 20

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rlelist ifelse

updated 9.2 years ago by theobroma22 ▴ 10 • written 9.2 years ago by maltethodberg ▴ 180

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Views genomicalignments IRangesList coverage RleList

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by ccanchaya • 0

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Comment: Subsetting DDS object for individual conditions over time by A ▴ 60

Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…

Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k

It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…

Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Votes

Answer: RNA Seq using Lrt

Answer: DESeq2 LRT Reduced Formula

Answer: DESeq2: LRT or WALD guidance

Answer: GSEA error

Answer: OrgDb for maize

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