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edgeR 4 conditions
edger
8.5 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.3k
views
Comment:
C: edgeR two conditions two diet treatment
8.5 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
2.0k
views
ChIPpeakAnno
annotate
ChIPpeakAnno
annotate
ChIPpeakAnno
updated 11.6 years ago by
Julie Zhu
★ 4.3k • written 11.6 years ago by
Paolo Kunderfranco
▴ 350
0
votes
2
replies
1.4k
views
lumi - limma contrast design
Cancer
Cancer
updated 11.6 years ago by
Axel Klenk
★ 1.1k • written 11.6 years ago by
Paolo Kunderfranco
▴ 350
0
votes
0
replies
1.9k
views
EximiR - Limma - miRCURY LNA - Exiqon
miRNA
Microarray
Cancer
limma
lumi
ExiMiR
miRNA
Microarray
Cancer
limma
lumi
ExiMiR
11.9 years ago
Paolo Kunderfranco
▴ 350
0
votes
0
replies
1.6k
views
Comment:
C: MEDIPS
12.2 years ago
Paolo Kunderfranco
▴ 350
0
votes
2
replies
1.6k
views
MEDIPS
Coverage
MEDIPS
Coverage
MEDIPS
updated 12.2 years ago by
Lukas Chavez
▴ 570 • written 12.2 years ago by
Paolo Kunderfranco
▴ 350
0
votes
1
reply
2.8k
views
DiffBind - error dba-count
DiffBind
DiffBind
updated 12.6 years ago by
Rory Stark
★ 5.2k • written 12.6 years ago by
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.4k
views
MEDIPS
Sequencing
Alignment
MEDIPS
Sequencing
Alignment
MEDIPS
updated 12.7 years ago by
Lukas Chavez
▴ 570 • written 12.7 years ago by
Paolo Kunderfranco
▴ 350
4
votes
2
replies
1.8k
views
MEDIPS
MEDIPS
MEDIPS
12.8 years ago
Paolo Kunderfranco
▴ 350
2
votes
1
reply
1.8k
views
Answer:
A: MEDIPS
12.8 years ago
Paolo Kunderfranco
▴ 350
0
votes
0
replies
2.9k
views
Comment:
C: ggplots2 - heatmap2 colour labels
13.2 years ago
Paolo Kunderfranco
▴ 350
0
votes
2
replies
2.9k
views
ggplots2 - heatmap2 colour labels
updated 13.2 years ago by
James W. MacDonald
68k • written 13.2 years ago by
Paolo Kunderfranco
▴ 350
0
votes
0
replies
1.1k
views
heatmap.2
13.2 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
3.5k
views
DiffBind - overlap between different peak callers
DiffBind
DiffBind
updated 13.2 years ago by
Rory Stark
▴ 100 • written 13.2 years ago by
Paolo Kunderfranco
▴ 350
0
votes
2
replies
5.1k
views
DiffBind - sample sheet for multiple replicates and peak
updated 13.2 years ago by
Rory Stark
▴ 100 • written 13.2 years ago by
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.6k
views
Comment:
C: #Identify differentially expressed genes
13.3 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.1k
views
lumi - Heatmap
lumi
lumi
updated 13.3 years ago by
Sean Davis
21k • written 13.3 years ago by
Paolo Kunderfranco
▴ 350
0
votes
4
replies
1.6k
views
#Identify differentially expressed genes
limma
lumi
limma
lumi
updated 13.3 years ago by
Gordon Smyth
53k • written 13.3 years ago by
Paolo Kunderfranco
▴ 350
0
votes
0
replies
2.1k
views
Comment:
C: DiffBind - overlap between different peak callers
13.3 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
2.1k
views
Comment:
C: DiffBind - overlap between different peak callers
13.3 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
2.1k
views
Answer:
A: DiffBind - overlap between different peak callers
13.3 years ago
Paolo Kunderfranco
▴ 350
0
votes
4
replies
2.1k
views
DiffBind - overlap between different peak callers
CMA
DiffBind
CMA
DiffBind
13.3 years ago
Paolo Kunderfranco
▴ 350
0
votes
0
replies
1.1k
views
lumi - limma - geneSymbol and geneName N/A
limma
lumi
limma
lumi
13.4 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.3k
views
DiffBind error loading dba.count
Cancer
CMA
DiffBind
Cancer
CMA
DiffBind
updated 13.4 years ago by
Gordon Brown
▴ 70 • written 13.4 years ago by
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.4k
views
DiffBind error loading dba.count
CMA
DiffBind
CMA
DiffBind
updated 13.4 years ago by
Gordon Brown
▴ 70 • written 13.4 years ago by
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.0k
views
lumi - limma - geneSymbol/geneName
limma
lumi
limma
lumi
updated 13.4 years ago by
Marc Carlson
★ 7.2k • written 13.4 years ago by
Paolo Kunderfranco
▴ 350
0
votes
0
replies
2.2k
views
Comment:
C: ChIPpeakAnno to find peaks nearest to miRNA
13.4 years ago
Paolo Kunderfranco
▴ 350
0
votes
3
replies
2.2k
views
ChIPpeakAnno to find peaks nearest to miRNA
miRNA
GO
BSgenome
BSgenome
ChIPpeakAnno
miRNA
GO
BSgenome
BSgenome
ChIPpeakAnno
updated 13.4 years ago by
Julie Zhu
★ 4.3k • written 13.4 years ago by
Paolo Kunderfranco
▴ 350
0
votes
0
replies
1.1k
views
ChIPpeakAnno - Annotation of miRNA
miRNA
GO
BSgenome
BSgenome
ChIPpeakAnno
miRNA
GO
BSgenome
BSgenome
ChIPpeakAnno
13.4 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.6k
views
lumi - construct a design matrix
lumi
CMA
lumi
CMA
updated 13.4 years ago by
Moshe Olshansky
▴ 260 • written 13.4 years ago by
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.7k
views
Comment:
C: #Identify differentially expressed genes
13.4 years ago
Paolo Kunderfranco
▴ 350
0
votes
1
reply
1.2k
views
LumiT VST error
lumi
lumi
updated 13.7 years ago by
Pan Du
▴ 440 • written 13.7 years ago by
Paolo Kunderfranco
▴ 350
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