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0
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0
replies
1.3k
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Comment:
C: Technical and biological replates in BitSeq
8.6 years ago
Sam McInturf
▴ 300
2
votes
3
replies
1.3k
views
Technical and biological replates in BitSeq
BitSeq
bitseq
rnaseq
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
Sam McInturf
▴ 300
0
votes
1
reply
1.8k
views
Comment:
C: DEXSeqHTML won't run - warning message: In is.na(x): is.na() applied to non-(lis
8.8 years ago
Sam McInturf
▴ 300
0
votes
3
replies
1.8k
views
DEXSeqHTML won't run - warning message: In is.na(x): is.na() applied to non-(list or vector) or type NULL.
dexseq
8.8 years ago
Sam McInturf
▴ 300
0
votes
0
replies
899
views
edgeR complex partial multifactorial design
edgeR
edgeR
10.4 years ago
Sam McInturf
▴ 300
0
votes
1
reply
2.8k
views
Comment:
C: Problems Counting Reads with summarizeOverlaps
10.4 years ago
Sam McInturf
▴ 300
0
votes
1
reply
2.8k
views
Comment:
C: Problems Counting Reads with summarizeOverlaps
10.4 years ago
Sam McInturf
▴ 300
0
votes
0
replies
979
views
genomicRanges/Features reads counted in features and inbetween features is not the total number of counted reads
GenomicRanges
GenomicRanges
10.4 years ago
Sam McInturf
▴ 300
0
votes
0
replies
696
views
Answer:
A: edgeR question
10.4 years ago
Sam McInturf
▴ 300
0
votes
9
replies
2.8k
views
Problems Counting Reads with summarizeOverlaps
biomaRt
Rsamtools
biomaRt
Rsamtools
updated 10.4 years ago by
Valerie Obenchain
★ 6.8k • written 10.4 years ago by
Sam McInturf
▴ 300
0
votes
0
replies
3.2k
views
Comment:
C: ShortRead qa() error: Error in density.default(qscore) : 'x' contains missing va
10.5 years ago
Sam McInturf
▴ 300
0
votes
2
replies
3.2k
views
ShortRead qa() error: Error in density.default(qscore) : 'x' contains missing values
PROcess
ShortRead
PROcess
ShortRead
updated 10.5 years ago by
Martin Morgan
25k • written 10.5 years ago by
Sam McInturf
▴ 300
0
votes
2
replies
2.7k
views
Differential expression analysis in Limma for one factor after adjusting for a covariate
Microarray
limma
Microarray
limma
updated 10.7 years ago by
QAMRA Aditi GIS
▴ 120 • written 10.7 years ago by
Sam McInturf
▴ 300
0
votes
1
reply
1.6k
views
Comment:
C: Finding my un-counted reads
10.7 years ago
Sam McInturf
▴ 300
0
votes
5
replies
1.6k
views
Finding my un-counted reads
Sequencing
rtracklayer
ShortRead
GenomicRanges
Sequencing
rtracklayer
ShortRead
updated 10.7 years ago by
Valerie Obenchain
★ 6.8k • written 10.7 years ago by
Sam McInturf
▴ 300
0
votes
2
replies
1.4k
views
Comment:
C: ReportingTools - trouble incorporating annotations
10.9 years ago
Sam McInturf
▴ 300
0
votes
1
reply
1.4k
views
Comment:
C: ReportingTools - trouble incorporating annotations
10.9 years ago
Sam McInturf
▴ 300
0
votes
9
replies
1.4k
views
ReportingTools - trouble incorporating annotations
Annotation
edgeR
GenomicRanges
Annotation
edgeR
GenomicRanges
updated 10.9 years ago by
James W. MacDonald
65k • written 10.9 years ago by
Sam McInturf
▴ 300
0
votes
1
reply
1.1k
views
Answer:
A: What is a good "control" for bacteria RNA-seq samples from a series of time poin
10.9 years ago
Sam McInturf
▴ 300
0
votes
1
reply
1.9k
views
Answer:
A: Multi-factor multi-level analysis of RNAseq data
10.9 years ago
Sam McInturf
▴ 300
0
votes
1
reply
2.1k
views
Comment:
C: using a gtf file to map reads
10.9 years ago
Sam McInturf
▴ 300
0
votes
9
replies
2.1k
views
using a gtf file to map reads
GenomicRanges
DESeq2
GenomicRanges
DESeq2
updated 10.9 years ago by
Michael Lawrence
★ 11k • written 10.9 years ago by
Sam McInturf
▴ 300
0
votes
1
reply
1.6k
views
CIGAR and seq lengths differ after trimming
Sequencing
convert
Sequencing
convert
updated 10.9 years ago by
Martin Morgan
25k • written 10.9 years ago by
Sam McInturf
▴ 300
0
votes
1
reply
1.7k
views
Comment:
C: ShortRead 3' trimming negative length vectors are not allowed
11.0 years ago
Sam McInturf
▴ 300
0
votes
1
reply
1.7k
views
Comment:
C: ShortRead 3' trimming negative length vectors are not allowed
11.0 years ago
Sam McInturf
▴ 300
0
votes
5
replies
1.7k
views
ShortRead 3' trimming negative length vectors are not allowed
charm
charm
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Sam McInturf
▴ 300
0
votes
0
replies
1.2k
views
Comment:
C: (no subject)
11.0 years ago
Sam McInturf
▴ 300
0
votes
1
reply
1.2k
views
Answer:
A: (no subject)
11.0 years ago
Sam McInturf
▴ 300
0
votes
3
replies
1.9k
views
GenomicRanges BamFileList() not a function anymore?
updated 11.0 years ago by
James W. MacDonald
65k • written 11.0 years ago by
Sam McInturf
▴ 300
0
votes
0
replies
1.9k
views
Comment:
C: GenomicRanges BamFileList() not a function anymore?
11.0 years ago
Sam McInturf
▴ 300
0
votes
1
reply
8.2k
views
Comment:
C: rtracklayer importing gtf files
11.1 years ago
Sam McInturf
▴ 300
0
votes
1
reply
1.3k
views
Comment:
C: Wheat annotation
11.9 years ago
Sam McInturf
▴ 300
0
votes
0
replies
1.7k
views
Comment:
C: limma all adj.P.Val the same
12.0 years ago
Sam McInturf
▴ 300
0
votes
6
replies
1.7k
views
limma all adj.P.Val the same
limma
limma
updated 12.0 years ago by
James W. MacDonald
65k • written 12.0 years ago by
Sam McInturf
▴ 300
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