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Comment: C: Technical and biological replates in BitSeq
9.2 years ago Sam McInturf ▴ 300
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Technical and biological replates in BitSeq
BitSeq bitseq rnaseq
updated 9.2 years ago by ★ 7.9k • written 9.2 years ago by ▴ 300
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Comment: C: DEXSeqHTML won't run - warning message: In is.na(x): is.na() applied to non-(lis
9.4 years ago Sam McInturf ▴ 300
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DEXSeqHTML won't run - warning message: In is.na(x): is.na() applied to non-(list or vector) or type NULL.
dexseq
9.4 years ago Sam McInturf ▴ 300
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edgeR complex partial multifactorial design
edgeR edgeR
10.9 years ago Sam McInturf ▴ 300
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Comment: C: Problems Counting Reads with summarizeOverlaps
10.9 years ago Sam McInturf ▴ 300
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3.0k
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Comment: C: Problems Counting Reads with summarizeOverlaps
10.9 years ago Sam McInturf ▴ 300
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genomicRanges/Features reads counted in features and inbetween features is not the total number of counted reads
GenomicRanges GenomicRanges
10.9 years ago Sam McInturf ▴ 300
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Answer: A: edgeR question
11.0 years ago Sam McInturf ▴ 300
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3.0k
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Problems Counting Reads with summarizeOverlaps
biomaRt Rsamtools biomaRt Rsamtools
updated 11.0 years ago by ★ 6.8k • written 11.0 years ago by ▴ 300
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Comment: C: ShortRead qa() error: Error in density.default(qscore) : 'x' contains missing va
11.0 years ago Sam McInturf ▴ 300
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2
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3.3k
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ShortRead qa() error: Error in density.default(qscore) : 'x' contains missing values
PROcess ShortRead PROcess ShortRead
updated 11.0 years ago by 25k • written 11.0 years ago by ▴ 300
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2
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2.8k
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Differential expression analysis in Limma for one factor after adjusting for a covariate
Microarray limma Microarray limma
updated 11.2 years ago by ▴ 120 • written 11.2 years ago by ▴ 300
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1.7k
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Comment: C: Finding my un-counted reads
11.2 years ago Sam McInturf ▴ 300
0
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5
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1.7k
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Finding my un-counted reads
Sequencing rtracklayer ShortRead GenomicRanges Sequencing rtracklayer ShortRead
updated 11.3 years ago by ★ 6.8k • written 11.3 years ago by ▴ 300
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2
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Comment: C: ReportingTools - trouble incorporating annotations
11.4 years ago Sam McInturf ▴ 300
0
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1
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1.6k
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Comment: C: ReportingTools - trouble incorporating annotations
11.4 years ago Sam McInturf ▴ 300
0
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9
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1.6k
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ReportingTools - trouble incorporating annotations
Annotation edgeR GenomicRanges Annotation edgeR GenomicRanges
updated 11.4 years ago by 67k • written 11.4 years ago by ▴ 300
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1.2k
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Answer: A: What is a good "control" for bacteria RNA-seq samples from a series of time poin
11.5 years ago Sam McInturf ▴ 300
0
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1
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2.1k
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Answer: A: Multi-factor multi-level analysis of RNAseq data
11.5 years ago Sam McInturf ▴ 300
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1
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2.3k
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Comment: C: using a gtf file to map reads
11.5 years ago Sam McInturf ▴ 300
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2.3k
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using a gtf file to map reads
GenomicRanges DESeq2 GenomicRanges DESeq2
updated 11.5 years ago by ★ 11k • written 11.5 years ago by ▴ 300
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1
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1.8k
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CIGAR and seq lengths differ after trimming
Sequencing convert Sequencing convert
updated 11.5 years ago by 25k • written 11.5 years ago by ▴ 300
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1
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1.9k
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Comment: C: ShortRead 3' trimming negative length vectors are not allowed
11.5 years ago Sam McInturf ▴ 300
0
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1
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1.9k
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Comment: C: ShortRead 3' trimming negative length vectors are not allowed
11.5 years ago Sam McInturf ▴ 300
0
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5
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1.9k
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 11.5 years ago by 25k • written 11.5 years ago by ▴ 300
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0
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1.4k
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Comment: C: (no subject)
11.6 years ago Sam McInturf ▴ 300
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1
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1.4k
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Answer: A: (no subject)
11.6 years ago Sam McInturf ▴ 300
0
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3
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2.0k
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GenomicRanges BamFileList() not a function anymore?
updated 11.6 years ago by 67k • written 11.6 years ago by ▴ 300
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0
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2.0k
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Comment: C: GenomicRanges BamFileList() not a function anymore?
11.6 years ago Sam McInturf ▴ 300
0
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1
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8.9k
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Comment: C: rtracklayer importing gtf files
11.7 years ago Sam McInturf ▴ 300
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1
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1.5k
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Comment: C: Wheat annotation
12.5 years ago Sam McInturf ▴ 300
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1.9k
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Comment: C: limma all adj.P.Val the same
12.5 years ago Sam McInturf ▴ 300
0
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6
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1.9k
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limma all adj.P.Val the same
limma limma
updated 12.5 years ago by 67k • written 12.5 years ago by ▴ 300
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