Showing : bitseq • reset
2
votes
3
replies
803
views
Technical and biological replates in BitSeq
BitSeq bitseq rnaseq
updated 6.1 years ago by 7.6k • written 6.1 years ago by ▴ 300
1
vote
1
reply
682
views
BitSeq with paired samples
bitseq paired samples
updated 6.2 years ago by ▴ 30 • written 6.2 years ago by • 0
5
votes
18
replies
1.8k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq bitseq cuffdiff Differential exon usage isoforms
6.4 years ago • updated 6.3 years ago elle ▴ 10
1
vote
5
replies
991
views
using BitSeq data as input for spliceR
bitseq spliceR
6.5 years ago elle ▴ 10
0
votes
1
reply
628
views
BitSeq getExpression (type=counts) - (why all 1 or higher)
BitSeq
updated 6.5 years ago by ▴ 50 • written 6.5 years ago by • 0
0
votes
0
replies
1.1k
views
Differential expression workflow for alternative splicing
dexseq bitseq spliceR
6.5 years ago elle ▴ 10
0
votes
2
replies
854
views
BitSeq transcript IDs
Alignment PROcess BitSeq Alignment PROcess BitSeq
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by ▴ 70
0
votes
1
reply
697
views
BitSeq getExpression crash
Alignment PROcess BitSeq Alignment PROcess BitSeq
updated 8.6 years ago by ▴ 70 • written 8.6 years ago by ▴ 30
0
votes
0
replies
686
views
BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
8.7 years ago Peter Glaus ▴ 70
0
votes
0
replies
681
views
BitSeq: Required input for 3' bias correction on transcripts.
RNASeq safe BitSeq RNASeq safe BitSeq
8.7 years ago Dave Gerrard ▴ 40
0
votes
1
reply
624
views
BitSeq: Required input for 3' bias correction on transcripts.
RNASeq BitSeq RNASeq BitSeq
updated 8.8 years ago by ▴ 70 • written 8.8 years ago by ▴ 40
0
votes
6
replies
1.0k
views
BitSeq input data error
BitSeq BitSeq
updated 9.0 years ago by ▴ 70 • written 9.0 years ago by ▴ 260
0
votes
0
replies
574
views
SamBit input data error
BitSeq BitSeq
9.0 years ago Fatemehsadat Seyednasrollah ▴ 260
13 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 normalization when using with derfinder by Debayan ▴ 20
Thanks a lot for the clarification.
Comment: results() function and finding the difference of differences by Nayrouz • 0
That's a great idea. I was wondering if there is a way to form a 1-row matrix that has a -1 for the `genotypeII.conditionB` coefficient a…
Comment: ensembldb support for Ensembl's transcript_name column by Johannes Rainer ★ 1.9k
Hi Mike, the `EnsDb`s you get from e.g. `AnnotationHub` are not created from GTF files but from the Ensembl databases using the Ensembl Pe…
Answer: Interaction model genes don't intersect by Michael Love 34k
This is fine that the trends don’t intersect — that is not what interaction terms are used to detect. No we don’t have a test for inters…
Comment: How to add pseudocount to DESeq2 dds object by Michael Love 34k
If these questionable samples have 0s for genes where other samples have high counts, where do those samples have their counts? Maybe they …
Votes
Quality Assessment of one color Agilent arrays?
C: Determining direction of logFC in limma
Answer: DESeq2 normalization when using with derfinder
Answer: DESeq2 normalization when using with derfinder
Answer: mitochondrial RNA percentage in bulk RNAseq data
Awards • All
Teacher to Johannes Rainer ★ 1.9k
Teacher to Aaron Lun ★ 27k
Scholar to tiagochst ▴ 150
Popular Question to mohammedtoufiq91 • 0
Popular Question to James W. MacDonald 58k
Locations • All
Germany, 3 minutes ago
Norway, 5 minutes ago
Athens, 6 minutes ago
France, 10 minutes ago
Republic of Ireland, 12 minutes ago
Traffic: 431 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6