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use Combat to adjust for hidden variables without knowing batch effect
Clustering sva Clustering sva
12.5 years ago W. Evan Johnson ▴ 870
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1.2k
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[combat] par.priot=FALSE
12.6 years ago W. Evan Johnson ▴ 870
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1
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8.3k
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Answer: A: Covariate for batch effect removal by ComBat
12.6 years ago W. Evan Johnson ▴ 870
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0
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1.1k
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Error while executing ComBat from sva library in bioconductor
probe sva probe sva
12.6 years ago W. Evan Johnson ▴ 870
0
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1
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1.3k
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Bioconductor Digest, Vol 124, Issue 5
GO Clustering edgeR GO Clustering edgeR
updated 12.6 years ago by ▴ 40 • written 12.6 years ago by ▴ 870
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1.9k
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request on negative values after 'sva' correction
Microarray Microarray
12.6 years ago W. Evan Johnson ▴ 870
0
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0
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1.5k
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Answer: A: first time using combat
12.6 years ago W. Evan Johnson ▴ 870
0
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0
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891
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Combat
12.6 years ago W. Evan Johnson ▴ 870
0
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2
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1.5k
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first time using combat
probe sva probe sva
updated 12.6 years ago by ▴ 10 • written 12.6 years ago by ▴ 870
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1
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2.0k
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[combat] Error in FUN(newX[, i], ...) : missing observations in cov/c
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 870
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1
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1.2k
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[combat] Re: Error in FUN(newX[, i], ...) : missing observations in cov/c
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 870
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0
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891
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ComBat
12.7 years ago W. Evan Johnson ▴ 870
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3.0k
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ComBat - question about normalization method
Microarray Normalization probe Microarray Normalization probe
12.7 years ago W. Evan Johnson ▴ 870
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0
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1.3k
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ComBat:
Normalization edgeR Normalization edgeR
12.7 years ago W. Evan Johnson ▴ 870
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0
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799
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Bioconductor Digest, Vol 122, Issue 5
Microarray convert sva Microarray convert sva
12.8 years ago W. Evan Johnson ▴ 870
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0
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3.2k
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ComBat: How to choose multiple covariates in ComBat analysis- Need advice
Microarray Microarray
12.8 years ago W. Evan Johnson ▴ 870
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0
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1.5k
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Answer: A: ComBat: How to choose multiple covariates in ComBat analysis- Need advice
12.9 years ago W. Evan Johnson ▴ 870
0
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6
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3.6k
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about ComBat plot for non parametric
Microarray Cancer Microarray Cancer
updated 13.0 years ago by ▴ 30 • written 13.0 years ago by ▴ 870
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1.0k
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[ComBat] ComBat outputting NAs with Large Batches - Switch to Log Likelihood
probe probe
13.1 years ago W. Evan Johnson ▴ 870
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0
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3.1k
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Answer: A: ComBat: multiple batch values
13.1 years ago W. Evan Johnson ▴ 870
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0
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1.7k
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ComBat: running with all samples but fail with sub-selection
Clustering Clustering
13.1 years ago W. Evan Johnson ▴ 870
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0
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1.3k
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Answer: A: Normalizing affymetrix chips with ERCC
13.1 years ago W. Evan Johnson ▴ 870
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0
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1.9k
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Comment: C: ComBat
13.1 years ago W. Evan Johnson ▴ 870
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1
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1.9k
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Answer: A: ComBat
13.1 years ago W. Evan Johnson ▴ 870
0
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5
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1.9k
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ComBat
13.2 years ago • updated 13.1 years ago W. Evan Johnson ▴ 870
0
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1
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1.7k
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe SCAN.UPC hgu133a2 safe SCAN.UPC
updated 13.2 years ago by ▴ 600 • written 13.2 years ago by ▴ 870
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1
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1.6k
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[combat] UPC availablility
affy frma SCAN.UPC affy frma SCAN.UPC
updated 13.2 years ago by ▴ 600 • written 13.2 years ago by ▴ 870
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0
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2.4k
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Answer: A: ComBat - pre and post Combat quantile normalization?
13.2 years ago W. Evan Johnson ▴ 870
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0
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2.4k
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Answer: A: ComBat - pre and post Combat quantile normalization?
13.2 years ago W. Evan Johnson ▴ 870
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0
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1.9k
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Comment: C: ComBat
13.2 years ago W. Evan Johnson ▴ 870
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0
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1.8k
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Comment: C: ComBat: Comparison of data
13.2 years ago W. Evan Johnson ▴ 870
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1
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1.8k
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Answer: A: ComBat: Comparison of data
13.2 years ago W. Evan Johnson ▴ 870
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0
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1.2k
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covariate information
GO GO
13.2 years ago W. Evan Johnson ▴ 870
0
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0
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1.3k
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Answer: A: Fwd: covariate information
13.2 years ago W. Evan Johnson ▴ 870
0
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0
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830
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Moving the ComBat user forum to the Bioconductor mailing list
13.2 years ago W. Evan Johnson ▴ 870
0
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2
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1.6k
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New Bioconductor Package: SCAN.UPC
Normalization affy frma Normalization affy frma
updated 13.2 years ago by ▴ 600 • written 13.2 years ago by ▴ 870
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1
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1.7k
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Answer: A: Batch effect
13.3 years ago W. Evan Johnson ▴ 870
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0
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1.5k
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Answer: A: affy: batch completely confounded with treatment
13.4 years ago W. Evan Johnson ▴ 870
88 results • Page 2 of 2
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