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3
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4
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What is the easiest way to make the GC content and length matrix for package cqn?
RNASeq edgeR cqn RNASeq edgeR cqn
updated 11.6 years ago by 25k • written 11.6 years ago by ▴ 380
0
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1
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1.5k
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VSN after xps with RaGene2.0ST chips - is there a way to keep an identifier?
vsn PROcess xps vsn PROcess xps
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ▴ 380
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3
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1.9k
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Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?
probe probe
updated 11.7 years ago by ★ 3.9k • written 11.7 years ago by ▴ 380
0
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1
reply
16k
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Comment: C: Limma design and contrast matrix question.
11.8 years ago Matthew Thornton ▴ 380
0
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0
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16k
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Comment: C: Limma design and contrast matrix question.
11.8 years ago Matthew Thornton ▴ 380
2
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5
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16k
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Limma design and contrast matrix question.
Microarray Regression limma Microarray Regression limma
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 380
0
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1
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1.7k
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Statistics questions regarding the use of Ambion ExFold ERCC standards with Affmetrix ST arrays.
Normalization vsn graph Normalization vsn graph
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 380
0
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0
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2.6k
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Answer: A: Importing RMA processed data into limma for eBayes
11.9 years ago Matthew Thornton ▴ 380
0
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1
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2.6k
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Importing RMA processed data into limma for eBayes
Microarray Normalization affy vsn limma PROcess xps Microarray Normalization affy vsn
11.9 years ago Matthew Thornton ▴ 380
0
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0
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2.3k
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Comment: C: Potential bug in package("rtracklayer") undefined symbol regcompA
12.6 years ago Matthew Thornton ▴ 380
0
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3
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2.3k
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Potential bug in package("rtracklayer") undefined symbol regcompA
updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ▴ 380
0
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0
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1.9k
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Bioconductor Digest, Vol 121, Issue 29
miRNA Annotation Normalization Visualization Clustering Infrastructure Cancer BSgenome vsn
12.6 years ago Matthew Thornton ▴ 380
0
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0
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1.2k
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I was wondering if anyone here was using SPP?
Sequencing Sequencing
12.7 years ago Matthew Thornton ▴ 380
0
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0
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2.5k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.7 years ago Matthew Thornton ▴ 380
0
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0
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2.5k
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Answer: A: Bioconductor Digest, Vol 120, Issue 12
12.7 years ago Matthew Thornton ▴ 380
0
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1
reply
2.5k
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Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
12.7 years ago Matthew Thornton ▴ 380
1
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1
reply
1.3k
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Normalizing affymetrix chips with ERCC
updated 13.0 years ago by ▴ 870 • written 13.0 years ago by ▴ 380
0
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2
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1.4k
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Normalization of Affymetrix microarray data with spike-in hybridization controls?
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 380
0
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0
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1.2k
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Simpleaffy error : No methods found in "Biobase" for requests: geneNames
simpleaffy simpleaffy
13.1 years ago Matthew Thornton ▴ 380
0
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0
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1.5k
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library(simpleaffy) error
simpleaffy simpleaffy
13.1 years ago Matthew Thornton ▴ 380
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