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Comment: Comment: Basic import of seqFISH from Spatial Genomics genePS into SpatialExperiment
4 months ago Matthew Thornton ▴ 380
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423
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Basic import of seqFISH from Spatial Genomics genePS into SpatialExperiment
seqFISH SpatialExperiment
4 months ago Matthew Thornton ▴ 380
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2
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
7 months ago Matthew Thornton ▴ 380
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Answer: Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
7 months ago Matthew Thornton ▴ 380
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Comment: Comment: GOstats - subsetting termGraphs with terms from the html report and missing node
21 months ago Matthew Thornton ▴ 380
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Comment: Comment: GOstats - subsetting termGraphs with terms from the html report and missing node
21 months ago Matthew Thornton ▴ 380
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Comment: Comment: GOstats - subsetting termGraphs with terms from the html report and missing node
21 months ago Matthew Thornton ▴ 380
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Comment: Comment: GOstats - subsetting termGraphs with terms from the html report and missing node
21 months ago Matthew Thornton ▴ 380
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9
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1.6k
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GOstats - subsetting termGraphs with terms from the html report and missing nodes
GOstats
updated 21 months ago by • 0 • written 21 months ago by ▴ 380
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Comment: Comment: DEX-Seq returns Error in FUN(X[[i]], ...) : subscript out of bounds when I use D
2.7 years ago Matthew Thornton ▴ 380
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Comment: Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
2.7 years ago Matthew Thornton ▴ 380
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Comment: Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
2.7 years ago Matthew Thornton ▴ 380
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Comment: Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
2.7 years ago Matthew Thornton ▴ 380
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DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FUN(X[[i]], ...) : subscript out of bounds" (DEXSeqDataSetFromHTSeq)
DEXSeq
updated 6 months ago by ▴ 30 • written 2.7 years ago by ▴ 380
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Comment: Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
2.7 years ago Matthew Thornton ▴ 380
0
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1
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4.0k
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Comment: Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
2.7 years ago Matthew Thornton ▴ 380
0
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1
reply
4.0k
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Comment: Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
2.7 years ago Matthew Thornton ▴ 380
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Comment: Comment: ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl'
2.8 years ago Matthew Thornton ▴ 380
2
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2
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ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl' I'm on day two, can it be sped up?
ensembldb
2.8 years ago Matthew Thornton ▴ 380
1
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1
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4.9k
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Processing Nanostring GeoMX Q3 normalized data as intensities with Limma
Limma GeoMX
updated 3.3 years ago by • 0 • written 3.5 years ago by ▴ 380
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492
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CAMTHC with RPKMs giving a very low cluster number than expected
CAMTHC
5.1 years ago Matthew Thornton ▴ 380
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Answer: A: Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differi
5.6 years ago Matthew Thornton ▴ 380
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4
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1.6k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.6 years ago Matthew Thornton ▴ 380
0
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0
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1.6k
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Comment: C: Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differi
5.6 years ago Matthew Thornton ▴ 380
0
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0
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1.6k
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Comment: C: Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differi
5.6 years ago Matthew Thornton ▴ 380
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0
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2.2k
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Comment: C: Combining and using 10x Genomics output in SingleCellExperiment Objects
5.7 years ago Matthew Thornton ▴ 380
1
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3
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Combining and using 10x Genomics output in SingleCellExperiment Objects
SingleCellExperiment
written 5.7 years ago by ▴ 380
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Answer: A: Segmentation Fault with development versions of R, Bioconductor, and DropletUtil
5.7 years ago Matthew Thornton ▴ 380
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2
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1.5k
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Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils Bioc-devel
5.7 years ago Matthew Thornton ▴ 380
0
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4
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2.2k
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Error importing molecule_info.h5 file generated by Cell Ranger 3.0.2 into DropletUtils
DropletUtils h5
updated 5.7 years ago by ★ 28k • written 5.7 years ago by ▴ 380
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1
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2.2k
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Comment: C: Error importing molecule_info.h5 file generated by Cell Ranger 3.0.2 into Drople
5.7 years ago Matthew Thornton ▴ 380
0
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0
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2.2k
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Comment: C: Error importing molecule_info.h5 file generated by Cell Ranger 3.0.2 into Drople
5.7 years ago Matthew Thornton ▴ 380
0
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0
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5.9k
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Comment: C: What are the methods to get count data per cell from single cell fastq given onl
5.7 years ago Matthew Thornton ▴ 380
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0
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5.9k
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Comment: C: What are the methods to get count data per cell from single cell fastq given onl
5.7 years ago Matthew Thornton ▴ 380
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0
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5.9k
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Comment: C: What are the methods to get count data per cell from single cell fastq given onl
5.8 years ago Matthew Thornton ▴ 380
0
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0
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5.9k
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Comment: C: What are the methods to get count data per cell from single cell fastq given onl
5.8 years ago Matthew Thornton ▴ 380
7
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7
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5.9k
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What are the methods to get count data per cell from single cell fastq given only R1, R2, and I1 fastq files
fastq single cell
updated 5.8 years ago by 52k • written 5.8 years ago by ▴ 380
1
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1
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1.5k
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Comment: C: DEXSeqHTML and biomart object
6.7 years ago Matthew Thornton ▴ 380
0
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0
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1.1k
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Comment: C: Annotation of DEXSeqHTML with biomaRt
6.7 years ago Matthew Thornton ▴ 380
0
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1
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1.1k
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Comment: C: Annotation of DEXSeqHTML with biomaRt
6.7 years ago Matthew Thornton ▴ 380
0
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4
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1.1k
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Annotation of DEXSeqHTML with biomaRt
dexseq biomart
6.7 years ago Matthew Thornton ▴ 380
0
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0
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1.2k
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Figuring out what long decent Phred value unaligned reads are
rnaseq alignment
8.1 years ago Matthew Thornton ▴ 380
0
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2
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1.4k
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xps - error in normalize - "Error: Length of non-varying units is zero."
Normalization PROcess xps Normalization PROcess xps
updated 10.4 years ago by ★ 3.9k • written 10.4 years ago by ▴ 380
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0
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1.7k
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Comment: C: External RNA controls on Rat Gene ST 2.0 chip lfc ~ 1 after xps rma??
10.5 years ago Matthew Thornton ▴ 380
0
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3
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1.7k
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External RNA controls on Rat Gene ST 2.0 chip lfc ~ 1 after xps rma??
Normalization xps Normalization xps
updated 10.5 years ago by ▴ 350 • written 10.5 years ago by ▴ 380
0
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1
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1.4k
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VSN with spike-in probes question
vsn vsn
updated 10.5 years ago by ★ 13k • written 10.5 years ago by ▴ 380
3
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4
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4.5k
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What is the easiest way to make the GC content and length matrix for package cqn?
RNASeq edgeR cqn RNASeq edgeR cqn
updated 10.7 years ago by 25k • written 10.7 years ago by ▴ 380
0
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1
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1.4k
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VSN after xps with RaGene2.0ST chips - is there a way to keep an identifier?
vsn PROcess xps vsn PROcess xps
updated 10.8 years ago by ★ 13k • written 10.8 years ago by ▴ 380
0
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3
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1.7k
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Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?
probe probe
updated 10.8 years ago by ★ 3.9k • written 10.8 years ago by ▴ 380
0
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1
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15k
views
Comment: C: Limma design and contrast matrix question.
10.9 years ago Matthew Thornton ▴ 380
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