Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
0
votes
1
reply
365
views
Answer:
Answer: vst transformation and zero counts
10 weeks ago
Michael Love
41k
0
votes
1
reply
1.1k
views
Answer:
Answer: How to calculate p value when comparing two sets of DEGs and not applying intera
10 weeks ago
Michael Love
41k
0
votes
1
reply
333
views
Answer:
Answer: utf-8 codec can't decode byte 0xd5
10 weeks ago
Michael Love
41k
0
votes
1
reply
401
views
Answer:
Answer: DESeq2: Adjust for treatment effect patient vs control
10 weeks ago
Michael Love
41k
0
votes
0
replies
386
views
Answer:
Answer: Pseudobulk-DESeq2 analyze multiple cell types at once?
10 weeks ago
Michael Love
41k
0
votes
1
reply
410
views
Answer:
Answer: DESeq filtering specific to contrasts
10 weeks ago
Michael Love
41k
0
votes
1
reply
435
views
Answer:
Answer: help checking the design matrix and contrast in DESeq2 "not full rank" scenario
10 weeks ago
Michael Love
41k
0
votes
0
replies
247
views
Answer:
Answer: Double batch effect (Individuals nested within blocks in DESeq2)
10 weeks ago
Michael Love
41k
1
vote
1
reply
220
views
Answer:
Answer: DESeq2 issue: can't create DESeq2 object
11 weeks ago
Michael Love
41k
0
votes
1
reply
424
views
Answer:
Answer: DESEQ2 Repeated Measures-like design error help
11 weeks ago
Michael Love
41k
0
votes
1
reply
251
views
Answer:
Answer: DESeq2 interaction terms RIPseq analysis
12 weeks ago
Michael Love
41k
2
votes
0
replies
214
views
Answer:
Answer: Continuous variable to identify responder genes using DESeq2
3 months ago
Michael Love
41k
0
votes
0
replies
186
views
Answer:
Answer: unequal number of treatmets to control
3 months ago
Michael Love
41k
0
votes
1
reply
267
views
Answer:
Answer: Batch effects removal across mRNA seq studies addressing different biological qu
3 months ago
Michael Love
41k
1
vote
0
replies
294
views
Answer:
Answer: PCA after DESeq2
3 months ago
Michael Love
41k
0
votes
0
replies
241
views
Answer:
Answer: DESeq2 lfcShrink drastic shrinkage
3 months ago
Michael Love
41k
1
vote
1
reply
334
views
Answer:
Answer: DESeq2 analysis on time-series RNA experiment
3 months ago
Michael Love
41k
0
votes
1
reply
451
views
Answer:
Answer: DESeq2 aborting after upgrade
3 months ago
Michael Love
41k
1
vote
2
replies
396
views
Answer:
Answer: Big differences between biological replicates makes DESeq2 result 0
3 months ago
Michael Love
41k
0
votes
1
reply
477
views
Answer:
Answer: Regressing out covariates from expression matrix for PCA visualization - can I u
3 months ago
Michael Love
41k
0
votes
1
reply
305
views
Answer:
Answer: Interaction tests and paired interaction tests in swish
3 months ago
Michael Love
41k
0
votes
1
reply
270
views
Answer:
Answer: Which fasta files to use for tximeta makeLinkTxome
3 months ago
Michael Love
41k
0
votes
0
replies
240
views
Answer:
Answer: DESEQ2 reduced model input into Pathfindr
3 months ago
Michael Love
41k
0
votes
0
replies
242
views
Answer:
Answer: Behavior of most genes in Ribosome-footprints dataset deviates from expected
3 months ago
Michael Love
41k
0
votes
0
replies
334
views
Answer:
Answer: Deleting a column from data frame and then running DESeq2
3 months ago
Michael Love
41k
0
votes
1
reply
413
views
Answer:
Answer: Plotting mean TPM of an expressed gene
3 months ago
Michael Love
41k
0
votes
0
replies
284
views
Answer:
Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago
Michael Love
41k
0
votes
1
reply
581
views
Answer:
Answer: DESeq2 design with multiple factors
3 months ago
Michael Love
41k
1
vote
0
replies
412
views
Answer:
Answer: DESeq2 Normalization for QC Samples
3 months ago
Michael Love
41k
0
votes
0
replies
389
views
Answer:
Answer: DESeq2 interaction term + sva
4 months ago
Michael Love
41k
0
votes
1
reply
468
views
Answer:
Answer: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
4 months ago
Michael Love
41k
0
votes
0
replies
581
views
Answer:
Answer: DESeq2 collinearity, adjusting for covariates, and the ground truth
4 months ago
Michael Love
41k
0
votes
1
reply
908
views
Answer:
Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago
Michael Love
41k
0
votes
0
replies
528
views
Answer:
Answer: DESeq2 : stat or lfcshrink for GSEA analysis
5 months ago
Michael Love
41k
2
votes
0
replies
561
views
Answer:
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
5 months ago
Michael Love
41k
1
vote
0
replies
284
views
Answer:
Answer: Lower FDR cutoff gives more gene counts
5 months ago
Michael Love
41k
1
vote
0
replies
374
views
Answer:
Answer: Using DESeq2 statistical framework with to identify differentially expressed loc
5 months ago
Michael Love
41k
0
votes
0
replies
455
views
Answer:
Answer: 'Subtracting' counts on basis of Negative control media and water samples
5 months ago
Michael Love
41k
1
vote
0
replies
366
views
Answer:
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
5 months ago
Michael Love
41k
0
votes
0
replies
278
views
Answer:
Answer: How to use DESeq results with LRT vs. with Wald's test
5 months ago
Michael Love
41k
0
votes
0
replies
324
views
Answer:
Answer: DEseq2 : Complex design with a mixture of male and female mice
5 months ago
Michael Love
41k
0
votes
1
reply
364
views
Answer:
Answer: Help Subsetting DDS for plotPCA for contrast groups
5 months ago
Michael Love
41k
0
votes
1
reply
459
views
Answer:
Answer: Deseq2 - Pairwise results from 6 conditions - error non-conformable arguments
5 months ago
Michael Love
41k
0
votes
0
replies
341
views
Answer:
Answer: DESeq2 and determining effects of treatment on a priori/candidate genes from a b
5 months ago
Michael Love
41k
2
votes
1
reply
405
views
Answer:
Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
5 months ago
Michael Love
41k
1
vote
1
reply
584
views
Answer:
Answer: Can DESeq2 be used to compare groups of genes?
5 months ago
Michael Love
41k
0
votes
1
reply
493
views
Answer:
Answer: DESeq2 for microbiome data: raw counts or percentages?
5 months ago
Michael Love
41k
0
votes
0
replies
618
views
Answer:
Answer: tximeta errors: couldn't find matching transcriptome, returning non-ranged Summa
5 months ago
Michael Love
41k
0
votes
1
reply
364
views
Answer:
Answer: Swimming downstream: transcript fold changes
5 months ago
Michael Love
41k
2
votes
2
replies
698
views
Answer:
Answer: DESeq2 unable to handle large count values
5 months ago
Michael Love
41k
3,653 results • Page
2 of 74
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6