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4
votes
6
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497
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FilterByExpr low counts with small sample size
edgeR
5 weeks ago • updated 4 weeks ago
Jonathan
▴ 10
5
votes
9
replies
1.4k
views
Batch correction and repeated measures
RUVSeq
sva
limma
updated 5 weeks ago by
Gordon Smyth
50k • written 8 months ago by
Jonathan
▴ 10
0
votes
0
replies
340
views
Huge effect of a single sample on DEGs
limma
8 months ago
Jonathan
▴ 10
4
votes
5
replies
905
views
Phenotype effect - building a contrast matrix - grouping vs interaction
limma
updated 8 months ago by
Gordon Smyth
50k • written 8 months ago by
Jonathan
▴ 10
6
votes
7
replies
805
views
Adding a group of samples reduces DEGs in other groups
RNASeq
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
Jonathan
▴ 10
2
votes
1
reply
743
views
Grouping DEGs yields varying results
RNASeq
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
Jonathan
▴ 10
4
votes
2
replies
1.3k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA
RNASeq
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
Jonathan
▴ 10
0
votes
4
replies
969
views
Limma multi-group, nested analysis with aggregation
limma
13 months ago • updated 10 months ago
Jonathan
▴ 10
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