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2
votes
2
replies
331
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Automatically generate contrasts from a model matrix / formula
limma
updated 9 weeks ago by
ATpoint
★ 4.6k • written 9 weeks ago by
Jonathan
▴ 10
0
votes
0
replies
1.0k
views
Comment:
Comment: FilterByExpr low counts with small sample size
8 months ago
Jonathan
▴ 10
0
votes
1
reply
1.0k
views
Comment:
Comment: FilterByExpr low counts with small sample size
8 months ago
Jonathan
▴ 10
4
votes
6
replies
1.0k
views
FilterByExpr low counts with small sample size
edgeR
8 months ago
Jonathan
▴ 10
0
votes
0
replies
1.0k
views
Comment:
Comment: FilterByExpr low counts with small sample size
8 months ago
Jonathan
▴ 10
0
votes
1
reply
2.0k
views
Comment:
Comment: Batch correction and repeated measures
9 months ago
Jonathan
▴ 10
0
votes
1
reply
2.0k
views
Comment:
Comment: Batch correction and repeated measures
15 months ago
Jonathan
▴ 10
0
votes
1
reply
2.0k
views
Comment:
Comment: Batch correction and repeated measures
15 months ago
Jonathan
▴ 10
0
votes
1
reply
2.0k
views
Comment:
Comment: Batch correction and repeated measures
15 months ago
Jonathan
▴ 10
5
votes
9
replies
2.0k
views
Batch correction and repeated measures
RUVSeq
sva
limma
updated 8 months ago by
Gordon Smyth
52k • written 15 months ago by
Jonathan
▴ 10
0
votes
0
replies
466
views
Huge effect of a single sample on DEGs
limma
15 months ago • updated 14 months ago
Jonathan
▴ 10
0
votes
1
reply
1.2k
views
Comment:
Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
15 months ago
Jonathan
▴ 10
0
votes
1
reply
1.2k
views
Comment:
Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
15 months ago
Jonathan
▴ 10
4
votes
5
replies
1.2k
views
Phenotype effect - building a contrast matrix - grouping vs interaction
limma
updated 15 months ago by
Gordon Smyth
52k • written 15 months ago by
Jonathan
▴ 10
0
votes
1
reply
1.1k
views
Comment:
Comment: Adding a group of samples reduces DEGs in other groups
16 months ago
Jonathan
▴ 10
0
votes
1
reply
1.1k
views
Comment:
Comment: Adding a group of samples reduces DEGs in other groups
16 months ago
Jonathan
▴ 10
6
votes
7
replies
1.1k
views
Adding a group of samples reduces DEGs in other groups
RNASeq
limma
updated 16 months ago by
Gordon Smyth
52k • written 16 months ago by
Jonathan
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: Limma multi-group, nested analysis with aggregation
16 months ago
Jonathan
▴ 10
0
votes
0
replies
1.1k
views
Comment:
Comment: Adding a group of samples reduces DEGs in other groups
16 months ago
Jonathan
▴ 10
2
votes
1
reply
1.0k
views
Grouping DEGs yields varying results
RNASeq
limma
updated 17 months ago by
Gordon Smyth
52k • written 17 months ago by
Jonathan
▴ 10
4
votes
2
replies
2.1k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA
RNASeq
limma
updated 17 months ago by
Gordon Smyth
52k • written 17 months ago by
Jonathan
▴ 10
0
votes
1
reply
1.4k
views
Comment:
Comment: Limma multi-group, nested analysis with aggregation
19 months ago
Jonathan
▴ 10
0
votes
4
replies
1.4k
views
Limma multi-group, nested analysis with aggregation
limma
19 months ago • updated 16 months ago
Jonathan
▴ 10
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