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Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
10 months ago Jonathan ▴ 10
3
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5
replies
2.1k
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Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 10 months ago by 68k • written 10 months ago by ▴ 10
2
votes
2
replies
896
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Automatically generate contrasts from a model matrix / formula
limma
updated 14 months ago by ★ 5.0k • written 14 months ago by ▴ 10
0
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0
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1.8k
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Comment: Comment: FilterByExpr low counts with small sample size
19 months ago Jonathan ▴ 10
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1
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1.8k
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Comment: Comment: FilterByExpr low counts with small sample size
20 months ago Jonathan ▴ 10
4
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6
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1.8k
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FilterByExpr low counts with small sample size
edgeR
20 months ago • updated 19 months ago Jonathan ▴ 10
0
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0
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1.8k
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Comment: Comment: FilterByExpr low counts with small sample size
20 months ago Jonathan ▴ 10
0
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1
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2.8k
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Comment: Comment: Batch correction and repeated measures
20 months ago Jonathan ▴ 10
0
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1
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2.8k
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Comment: Comment: Batch correction and repeated measures
2.2 years ago Jonathan ▴ 10
0
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1
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2.8k
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Comment: Comment: Batch correction and repeated measures
2.2 years ago Jonathan ▴ 10
0
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1
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2.8k
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Comment: Comment: Batch correction and repeated measures
2.2 years ago Jonathan ▴ 10
5
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9
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2.8k
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Batch correction and repeated measures
RUVSeq sva limma
updated 20 months ago by 53k • written 2.2 years ago by ▴ 10
0
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0
replies
575
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Huge effect of a single sample on DEGs
limma
2.2 years ago Jonathan ▴ 10
0
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1
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1.6k
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Comment: Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
2.2 years ago Jonathan ▴ 10
0
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1
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1.6k
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Comment: Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
2.2 years ago Jonathan ▴ 10
4
votes
5
replies
1.6k
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Phenotype effect - building a contrast matrix - grouping vs interaction
limma
updated 2.2 years ago by 53k • written 2.2 years ago by ▴ 10
0
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1
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1.5k
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
2.4 years ago Jonathan ▴ 10
0
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1
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1.5k
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
2.4 years ago Jonathan ▴ 10
6
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7
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1.5k
views
Adding a group of samples reduces DEGs in other groups
RNASeq limma
updated 2.4 years ago by 53k • written 2.4 years ago by ▴ 10
0
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0
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1.8k
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Comment: Comment: Limma multi-group, nested analysis with aggregation
2.4 years ago Jonathan ▴ 10
0
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0
replies
1.5k
views
Comment: Comment: Adding a group of samples reduces DEGs in other groups
2.4 years ago Jonathan ▴ 10
2
votes
1
reply
1.2k
views
Grouping DEGs yields varying results
RNASeq limma
updated 2.4 years ago by 53k • written 2.4 years ago by ▴ 10
4
votes
2
replies
3.3k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA RNASeq limma
updated 2.4 years ago by 53k • written 2.4 years ago by ▴ 10
0
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1
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1.8k
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Comment: Comment: Limma multi-group, nested analysis with aggregation
2.6 years ago Jonathan ▴ 10
0
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4
replies
1.8k
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Limma multi-group, nested analysis with aggregation
limma
2.6 years ago • updated 2.4 years ago Jonathan ▴ 10
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