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Comment:
Comment: FilterByExpr low counts with small sample size
13 days ago
Jonathan
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0
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430
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Comment:
Comment: FilterByExpr low counts with small sample size
16 days ago
Jonathan
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4
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6
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430
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FilterByExpr low counts with small sample size
edgeR
18 days ago • updated 13 days ago
Jonathan
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0
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430
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Comment:
Comment: FilterByExpr low counts with small sample size
17 days ago
Jonathan
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1.3k
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Comment:
Comment: Batch correction and repeated measures
6 weeks ago
Jonathan
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1.3k
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Comment:
Comment: Batch correction and repeated measures
7 months ago
Jonathan
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1.3k
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Comment:
Comment: Batch correction and repeated measures
7 months ago
Jonathan
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1.3k
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Comment:
Comment: Batch correction and repeated measures
7 months ago
Jonathan
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5
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9
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1.3k
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Batch correction and repeated measures
RUVSeq
sva
limma
updated 18 days ago by
Gordon Smyth
50k • written 7 months ago by
Jonathan
▴ 10
0
votes
0
replies
332
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Huge effect of a single sample on DEGs
limma
7 months ago
Jonathan
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0
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1
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875
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Comment:
Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
7 months ago
Jonathan
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0
votes
1
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875
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Comment:
Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
7 months ago
Jonathan
▴ 10
4
votes
5
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875
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Phenotype effect - building a contrast matrix - grouping vs interaction
limma
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
Jonathan
▴ 10
0
votes
1
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769
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Comment:
Comment: Adding a group of samples reduces DEGs in other groups
9 months ago
Jonathan
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1
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769
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Comment:
Comment: Adding a group of samples reduces DEGs in other groups
9 months ago
Jonathan
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6
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7
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769
views
Adding a group of samples reduces DEGs in other groups
RNASeq
limma
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
Jonathan
▴ 10
0
votes
0
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922
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Comment:
Comment: Limma multi-group, nested analysis with aggregation
9 months ago
Jonathan
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0
votes
0
replies
769
views
Comment:
Comment: Adding a group of samples reduces DEGs in other groups
9 months ago
Jonathan
▴ 10
2
votes
1
reply
718
views
Grouping DEGs yields varying results
RNASeq
limma
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
Jonathan
▴ 10
4
votes
2
replies
1.2k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA
RNASeq
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
Jonathan
▴ 10
0
votes
1
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922
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Comment:
Comment: Limma multi-group, nested analysis with aggregation
12 months ago
Jonathan
▴ 10
0
votes
4
replies
922
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Limma multi-group, nested analysis with aggregation
limma
12 months ago • updated 9 months ago
Jonathan
▴ 10
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