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[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt genomes Cancer Organism biomaRt genomes
13.7 years ago Malcolm Cook ★ 1.6k
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Answer: A: distanceToNearest for GRanges?
13.7 years ago Malcolm Cook ★ 1.6k
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Comment: C: How to convert from IRanges(List) to Rle(List)
13.7 years ago Malcolm Cook ★ 1.6k
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Answer: A: load a TranscriptDb object in another R session?
13.7 years ago Malcolm Cook ★ 1.6k
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Comment: C: Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer
13.8 years ago Malcolm Cook ★ 1.6k
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Comment: C: Create transcriptDb using gff3 files? - library GenomicFeatures and rtracklayer
13.8 years ago Malcolm Cook ★ 1.6k
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Answer: A: distanceToNearest for GRanges?
13.8 years ago Malcolm Cook ★ 1.6k
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Answer: A: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
13.8 years ago Malcolm Cook ★ 1.6k
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Comment: C: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
13.9 years ago Malcolm Cook ★ 1.6k
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[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures Cancer Organism biomaRt GenomicFeatures
updated 13.9 years ago by ▴ 660 • written 13.9 years ago by ★ 1.6k
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BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute fr…
TranscriptDb biomaRt GenomicFeatures TranscriptDb biomaRt GenomicFeatures
13.9 years ago Malcolm Cook ★ 1.6k
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GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR i…
biomaRt biomaRt
updated 13.9 years ago by ▴ 660 • written 13.9 years ago by ★ 1.6k
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error "Too many pushAbortHandlers, can only handle 11" while exporting bedGraph/bigWig using rtracklayer from Bioconductor
rtracklayer rtracklayer
updated 13.9 years ago by ★ 11k • written 13.9 years ago by ★ 1.6k
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Comment: C: FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : cou
13.9 years ago Malcolm Cook ★ 1.6k
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Comment: C: FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : cou
13.9 years ago Malcolm Cook ★ 1.6k
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Comment: C: FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : cou
13.9 years ago Malcolm Cook ★ 1.6k
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FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
biomaRt biomaRt
updated 13.9 years ago by ★ 7.2k • written 13.9 years ago by ★ 1.6k
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GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
biomaRt biomaRt
13.9 years ago Malcolm Cook ★ 1.6k
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Comment: C: GRanges setdiff With Features on Both Strands
14.0 years ago Malcolm Cook ★ 1.6k
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Comment: C: GRanges setdiff With Features on Both Strands
14.0 years ago Malcolm Cook ★ 1.6k
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Comment: C: GenomicFeatures makeTranscriptDbFromBiomart failure
14.0 years ago Malcolm Cook ★ 1.6k
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Comment: C: rtracklayer laying a track
14.0 years ago Malcolm Cook ★ 1.6k
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Comment: C: Access to archived versions of Ensembl with biomaRt
14.0 years ago Malcolm Cook ★ 1.6k
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GenomicFeatures makeTranscriptDbFromBiomart failure
updated 14.0 years ago by 16k • written 14.0 years ago by ★ 1.6k
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biomaRt access to ensemble genomes 11 fungi_mart_11
genomes genomes
updated 14.0 years ago by ▴ 60 • written 14.0 years ago by ★ 1.6k
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Comment: C: biomaRt access to ensemble genomes 11 fungi_mart_11
14.0 years ago Malcolm Cook ★ 1.6k
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Comment: C: GRanges - reduce() function
14.1 years ago Malcolm Cook ★ 1.6k
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Answer: A: "internal equal" overlap mode for GRangesList
14.2 years ago Malcolm Cook ★ 1.6k
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Comment: C: HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"
14.3 years ago Malcolm Cook ★ 1.6k
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HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"
GO BSgenome BSgenome GO BSgenome BSgenome
updated 14.3 years ago by 16k • written 14.3 years ago by ★ 1.6k
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Comment: C: rtracklayer gff import
14.7 years ago Malcolm Cook ★ 1.6k
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Comment: C: Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
14.8 years ago Malcolm Cook ★ 1.6k
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Comment: C: Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
14.8 years ago Malcolm Cook ★ 1.6k
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Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
updated 14.8 years ago by 25k • written 14.8 years ago by ★ 1.6k
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Comment: C: SNP retrieval between two mouse strains
14.8 years ago Malcolm Cook ★ 1.6k
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Comment: C: SNP retrieval between two mouse strains
14.8 years ago Malcolm Cook ★ 1.6k
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Comment: C: Mapping genomic coordinates to transcript coordinates? (revived)
14.8 years ago Malcolm Cook ★ 1.6k
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1.1k
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Mapping genomic coordinates to transcript coordinates? (revived)
GenomicFeatures GenomicFeatures
updated 14.9 years ago by ▴ 90 • written 14.9 years ago by ★ 1.6k
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Comment: C: extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)
14.9 years ago Malcolm Cook ★ 1.6k
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extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)
TranscriptDb biomaRt TranscriptDb biomaRt
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ★ 1.6k
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Answer: A: GFF3 format from ucsc
20.4 years ago Malcolm Cook ★ 1.6k
191 results • Page 4 of 4
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