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7 months ago • updated 4 weeks ago
shepherl
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376
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updated 3 months ago by
Guido Hooiveld
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hayleyw
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16 months ago • updated 15 months ago
Thomas
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Lenny186
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Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
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sandmann.t
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2.5 years ago • updated 2.0 years ago
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2.7 years ago
Francois Marchildon
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3.7 years ago
Johannes Rainer
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Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint
Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★
4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★
4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
•
0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running:
```
counts <- featureCounts(
…
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
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