Showing : plot • reset
11
votes
15
replies
2.8k
views
edgeR - MDS Plot for Count Data
edger DEG mds plot
6.8 years ago • updated 6.7 years ago baus87 • 0
4
votes
1
reply
2.0k
views
gviz: add horizontal line to DataTrack object
bioconductor gviz plot horizontal line
updated 7.9 years ago by ★ 1.6k • written 7.9 years ago by ▴ 10
2
votes
2
replies
1.8k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 40
2
votes
2
replies
1.3k
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 7.9 years ago by ▴ 130 • written 7.9 years ago by ▴ 10
2
votes
1
reply
936
views
Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 6.9 years ago by ★ 2.0k • written 6.9 years ago by ▴ 90
2
votes
2
replies
1.1k
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind plot venn diagram
updated 3.6 years ago by ★ 5.2k • written 3.6 years ago by • 0
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.7 years ago oswaldo.lorenzo ▴ 10
2
votes
5
replies
1.7k
views
rlog, lfcShrink and vst on gene subset
deseq2 subsetting plot
updated 5.9 years ago by 42k • written 6.0 years ago by ▴ 10
2
votes
2
replies
1.3k
views
Change legend names when using plotBCV
edger plot Tutorial
updated 5.8 years ago by 50k • written 5.8 years ago by • 0
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 7.4 years ago by ★ 11k • written 7.4 years ago by ▴ 10
1
vote
2
replies
1.9k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 7.2 years ago by ▴ 90 • written 7.2 years ago by ▴ 10
1
vote
1
reply
1.6k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
7.7 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
1.5k
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 8.3 years ago by 65k • written 8.3 years ago by ▴ 50
1
vote
2
replies
1.8k
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 3.7 years ago by ▴ 40 • written 3.7 years ago by • 0
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 4.6 years ago by ▴ 350 • written 4.6 years ago by • 0
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 210 • written 3.6 years ago by • 0
1
vote
3
replies
2.9k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
1
vote
2
replies
1.6k
views
"confint" type in DataTrack function (Gviz)
Gviz plot confidence interval
updated 8.8 years ago by ★ 1.6k • written 8.8 years ago by ▴ 40
0
votes
5
replies
2.9k
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind plot heatmap.3
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
0
votes
2
replies
989
views
Can we control colors for two different colAtributes
diffbind plot plotHeatmap
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
0
votes
1
reply
800
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind plot plotHeatmap dba.plotHeatmap
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
0
votes
1
reply
1.0k
views
How to create a violin plot
plot ggcyte
updated 4.6 years ago by ★ 3.9k • written 4.6 years ago by • 0
0
votes
2
replies
924
views
Correlation plot how to improve?
plot correlation
4.6 years ago annkolman78 • 0
0
votes
3
replies
1.5k
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind plot color
updated 4.3 years ago by ★ 5.2k • written 4.5 years ago by ▴ 10
0
votes
0
replies
703
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
4.1 years ago raquelponti • 0
0
votes
9
replies
1.2k
views
Plotting change over time
deseq2 Plot
updated 4.1 years ago by 42k • written 4.1 years ago by • 0
0
votes
1
reply
804
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP R Bioconductor Plot
updated 3.5 years ago by 3.9k • written 3.5 years ago by • 0
0
votes
1
reply
765
views
two tracks have the same axis
plot Gviz
3.5 years ago 腾 • 0
0
votes
2
replies
3.6k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 3.3 years ago by ★ 4.1k • written 3.3 years ago by • 0
0
votes
0
replies
654
views
Problem with Plots or Graphics Device in the RStudio
NullDevice plot R
2.6 years ago Abdou-samad • 0
0
votes
0
replies
446
views
maSigPro visualizing individually each plot from each cluster
plot maSigPro Clustering
20 months ago oseias.rf.junior • 0
0
votes
0
replies
685
views
Gviz: set colors for UTRs
plot color Gviz utr
3.1 years ago ginlucks • 0
0
votes
1
reply
792
views
part of the volcano plot does not appear.
plot volcano volcanoplot
updated 15 months ago by ▴ 780 • written 15 months ago by ▴ 10
0
votes
2
replies
3.8k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 2.1 years ago by ▴ 20 • written 2.2 years ago by • 0
0
votes
0
replies
761
views
Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 2.2 years ago by 42k • written 2.2 years ago by • 0
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
8.9 years ago bruce.moran ▴ 30
0
votes
4
replies
1.2k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 16 months ago by 65k • written 2.8 years ago by • 0
0
votes
4
replies
2.6k
views
heatmap.2 like plot in ggplot
plot
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 120
0
votes
1
reply
1.2k
views
lumi: can't see sample corr pairwise and MAplot plots
lumi plot
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 100
0
votes
1
reply
4.2k
views
flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks plot
updated 9.3 years ago by 65k • written 9.3 years ago by ▴ 10
0
votes
2
replies
5.2k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.1 years ago greg.mulhearn • 0
0
votes
5
replies
2.0k
views
R plot error
r bioconductor graph plot data representation in graphical forms
9.0 years ago megha.24may • 0
0
votes
0
replies
1.1k
views
GenomeGraphs, modify Y axis
genomegraphs biomart plot graphics
8.7 years ago koenhendriks89 • 0
0
votes
0
replies
1.1k
views
changing the plot type in minet package
minet plot
8.1 years ago Angel ▴ 40
0
votes
0
replies
1.0k
views
Plotting False discoveries vs genes selected
plot
7.8 years ago humberto_munoz • 0
0
votes
1
reply
1.3k
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus calcICL plot
7.5 years ago • updated 7.0 years ago juan-pablo.cerapio-arroyo ▴ 10
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.0 years ago by • 0 • written 7.3 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Save multiple plots into single pdf from Deseq2 analysis?
plot pdf dev.off
updated 6.9 years ago by ★ 13k • written 6.9 years ago by • 0
0
votes
0
replies
1.0k
views
Plotting DataTrack for non-model organism.
Gviz plot chipseq
6.7 years ago anupriyaverma1408 • 0
0
votes
3
replies
1.2k
views
Adding gene names which are differentially expressed in the plot
edgeR plot differential gene expression
6.5 years ago fawazfebin ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm by Michael Love 42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Answer: ERROR; return code from pthread_create() is 22 by James W. MacDonald 65k
Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards • All
Popular Question to Mike • -60
Popular Question to shepherl 3.9k
Popular Question to Hussain • 0
Popular Question to euge.eugenio ▴ 20
Popular Question to Dario Strbenac ★ 1.5k
Locations • All
Poland, 2 minutes ago
United States, 8 minutes ago
United States, 11 minutes ago
Seattle, WA, United States, 19 minutes ago
United States, 31 minutes ago
Traffic: 691 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6