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Answer: Answer: Brachypodium distachyon db
12 weeks ago James W. MacDonald 66k
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1
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251
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Answer: Answer: How to make GSEAplot with chip set
12 weeks ago James W. MacDonald 66k
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247
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Answer: Answer: Gene Ontology doubt
12 weeks ago James W. MacDonald 66k
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445
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Comment: Comment: fgsea fork
12 weeks ago James W. MacDonald 66k
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2
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310
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Answer: Answer: Minfi - estimatecellscount
12 weeks ago James W. MacDonald 66k
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286
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Answer: Answer: WGCNA: analysis of complex trait associations with regressions
12 weeks ago James W. MacDonald 66k
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208
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Answer: Answer: Trimming a section of a scaffold from a genome
3 months ago James W. MacDonald 66k
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622
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Comment: Comment: Microarray Limma Model fitting and DEG
3 months ago James W. MacDonald 66k
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2
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622
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Answer: Answer: Microarray Limma Model fitting and DEG
3 months ago James W. MacDonald 66k
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266
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Answer: Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
3 months ago James W. MacDonald 66k
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240
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Answer: Answer: bioconductor emailing list
3 months ago James W. MacDonald 66k
2
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607
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Comment: Comment: Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
3 months ago James W. MacDonald 66k
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296
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Answer: Answer: How to extract counts from a DESeq dataset ordered by a specific sample?
3 months ago James W. MacDonald 66k
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541
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Comment: Comment: Batch Effect Correction, Gene Filtering
3 months ago James W. MacDonald 66k
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541
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Comment: Comment: Batch Effect Correction, Gene Filtering
3 months ago James W. MacDonald 66k
2
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541
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Answer: Answer: Batch Effect Correction, Gene Filtering
3 months ago James W. MacDonald 66k
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1.2k
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Comment: Comment: Issue with Biomart- cannot access ensembl
3 months ago James W. MacDonald 66k
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309
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Answer: Answer: Non-empty droplets versus good quality cells
3 months ago James W. MacDonald 66k
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462
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Comment: Comment: Unable to annotate ExpressionSet object from hugene11st chip
3 months ago James W. MacDonald 66k
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2
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351
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Answer: Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
3 months ago James W. MacDonald 66k
2
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1
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392
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Answer: Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
3 months ago James W. MacDonald 66k
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462
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Answer: Answer: Unable to annotate ExpressionSet object from hugene11st chip
3 months ago James W. MacDonald 66k
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341
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Answer: Answer: Perfoming clumping using ieugwasr package
3 months ago James W. MacDonald 66k
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224
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Answer: Answer: problem with ClusterRepro function
3 months ago James W. MacDonald 66k
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524
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Comment: Comment: DESeq2 filtering vs edgeR filtering
3 months ago James W. MacDonald 66k
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2.1k
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Comment: Comment: Problem at champ.load
3 months ago James W. MacDonald 66k
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3.6k
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Comment: Comment: error in ChAMP loading file
3 months ago James W. MacDonald 66k
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321
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Answer: Answer: Error in classify_gene_pairs
3 months ago James W. MacDonald 66k
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203
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Answer: Answer: Is random access by row index possible for an indexed VCF file?
3 months ago James W. MacDonald 66k
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520
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Comment: Comment: DESeq and SVA for batch effect
3 months ago James W. MacDonald 66k
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1
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520
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Comment: Comment: DESeq and SVA for batch effect
3 months ago James W. MacDonald 66k
1
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1
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321
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Answer: Answer: supportedOrganisms() in goseq producing Error in names(trackIds)
3 months ago James W. MacDonald 66k
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230
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Answer: Answer: Error with BSgenome, wanting to analyse non-model species with ATACseqQC
3 months ago James W. MacDonald 66k
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2
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520
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Answer: Answer: DESeq and SVA for batch effect
3 months ago James W. MacDonald 66k
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1
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616
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Comment: Comment: Constrast for Time Course Experiments using Limma
3 months ago James W. MacDonald 66k
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449
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Comment: Comment: Factor vs Character in design
3 months ago James W. MacDonald 66k
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2
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449
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Comment: Comment: Factor vs Character in design
3 months ago James W. MacDonald 66k
1
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1
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449
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Answer: Answer: Factor vs Character in design
3 months ago James W. MacDonald 66k
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1.8k
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Comment: Comment: How to get DMR for Infinium methylation EPIC v2
3 months ago James W. MacDonald 66k
0
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361
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Comment: Comment: Would I treat surrogate variables as batches?
3 months ago James W. MacDonald 66k
1
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0
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569
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Comment: Comment: DGE analysis with LIMMA
3 months ago James W. MacDonald 66k
2
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1
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569
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Comment: Comment: DGE analysis with LIMMA
3 months ago James W. MacDonald 66k
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228
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Answer: Answer: error in Matrix function
3 months ago James W. MacDonald 66k
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1
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361
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Answer: Answer: Would I treat surrogate variables as batches?
3 months ago James W. MacDonald 66k
2
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1
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569
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Answer: Answer: DGE analysis with LIMMA
3 months ago James W. MacDonald 66k
0
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0
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301
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Answer: Answer: Changed DESeq2 comparison value but the heatmap is still the same
3 months ago James W. MacDonald 66k
2
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1
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586
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Comment: Comment: Estimating Cell Counts for EPIC V2 array data
3 months ago James W. MacDonald 66k
3
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1
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586
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Answer: Answer: Estimating Cell Counts for EPIC V2 array data
3 months ago James W. MacDonald 66k
2
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0
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431
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Answer: Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
3 months ago James W. MacDonald 66k
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0
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333
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Comment: Comment: impute.knn produces different results based on matrix order
3 months ago James W. MacDonald 66k
8,450 results • Page 4 of 169
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