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2
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531
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Answer: Answer: Batch Effect Correction, Gene Filtering
12 weeks ago James W. MacDonald 66k
0
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0
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1.2k
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Comment: Comment: Issue with Biomart- cannot access ensembl
12 weeks ago James W. MacDonald 66k
0
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0
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298
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Answer: Answer: Non-empty droplets versus good quality cells
12 weeks ago James W. MacDonald 66k
0
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1
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453
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Comment: Comment: Unable to annotate ExpressionSet object from hugene11st chip
12 weeks ago James W. MacDonald 66k
4
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2
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337
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Answer: Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
3 months ago James W. MacDonald 66k
2
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1
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368
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Answer: Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
3 months ago James W. MacDonald 66k
0
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1
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453
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Answer: Answer: Unable to annotate ExpressionSet object from hugene11st chip
3 months ago James W. MacDonald 66k
0
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0
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321
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Answer: Answer: Perfoming clumping using ieugwasr package
3 months ago James W. MacDonald 66k
0
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0
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219
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Answer: Answer: problem with ClusterRepro function
3 months ago James W. MacDonald 66k
0
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1
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514
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Comment: Comment: DESeq2 filtering vs edgeR filtering
3 months ago James W. MacDonald 66k
0
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0
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2.1k
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Comment: Comment: Problem at champ.load
3 months ago James W. MacDonald 66k
0
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1
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3.6k
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Comment: Comment: error in ChAMP loading file
3 months ago James W. MacDonald 66k
0
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1
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314
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Answer: Answer: Error in classify_gene_pairs
3 months ago James W. MacDonald 66k
0
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0
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195
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Answer: Answer: Is random access by row index possible for an indexed VCF file?
3 months ago James W. MacDonald 66k
0
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1
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510
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Comment: Comment: DESeq and SVA for batch effect
3 months ago James W. MacDonald 66k
0
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1
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510
views
Comment: Comment: DESeq and SVA for batch effect
3 months ago James W. MacDonald 66k
1
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1
reply
314
views
Answer: Answer: supportedOrganisms() in goseq producing Error in names(trackIds)
3 months ago James W. MacDonald 66k
1
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0
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226
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Answer: Answer: Error with BSgenome, wanting to analyse non-model species with ATACseqQC
3 months ago James W. MacDonald 66k
0
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2
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510
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Answer: Answer: DESeq and SVA for batch effect
3 months ago James W. MacDonald 66k
0
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1
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603
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Comment: Comment: Constrast for Time Course Experiments using Limma
3 months ago James W. MacDonald 66k
0
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0
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433
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Comment: Comment: Factor vs Character in design
3 months ago James W. MacDonald 66k
1
vote
2
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433
views
Comment: Comment: Factor vs Character in design
3 months ago James W. MacDonald 66k
1
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1
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433
views
Answer: Answer: Factor vs Character in design
3 months ago James W. MacDonald 66k
0
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0
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1.8k
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Comment: Comment: How to get DMR for Infinium methylation EPIC v2
3 months ago James W. MacDonald 66k
0
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0
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354
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Comment: Comment: Would I treat surrogate variables as batches?
3 months ago James W. MacDonald 66k
1
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0
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559
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Comment: Comment: DGE analysis with LIMMA
3 months ago James W. MacDonald 66k
2
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1
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559
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Comment: Comment: DGE analysis with LIMMA
3 months ago James W. MacDonald 66k
0
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0
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218
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Answer: Answer: error in Matrix function
3 months ago James W. MacDonald 66k
0
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1
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354
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Answer: Answer: Would I treat surrogate variables as batches?
3 months ago James W. MacDonald 66k
2
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1
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559
views
Answer: Answer: DGE analysis with LIMMA
3 months ago James W. MacDonald 66k
0
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0
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287
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Answer: Answer: Changed DESeq2 comparison value but the heatmap is still the same
3 months ago James W. MacDonald 66k
2
votes
1
reply
570
views
Comment: Comment: Estimating Cell Counts for EPIC V2 array data
3 months ago James W. MacDonald 66k
3
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1
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570
views
Answer: Answer: Estimating Cell Counts for EPIC V2 array data
3 months ago James W. MacDonald 66k
2
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0
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418
views
Answer: Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
3 months ago James W. MacDonald 66k
0
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0
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323
views
Comment: Comment: impute.knn produces different results based on matrix order
3 months ago James W. MacDonald 66k
0
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0
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226
views
Answer: Answer: Matrix multiplication error to estimate telomere length
3 months ago James W. MacDonald 66k
0
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1
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323
views
Answer: Answer: impute.knn produces different results based on matrix order
3 months ago James W. MacDonald 66k
1
vote
2
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508
views
Answer: Answer: "could not find function "readTSGE" in package ctsGE" Error occurs when trying t
3 months ago James W. MacDonald 66k
0
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0
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805
views
Comment: Comment: Help creating BSgenome object for new canine and feline genomes?
3 months ago James W. MacDonald 66k
0
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0
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410
views
Answer: Answer: Error in featureCounts matrix
3 months ago James W. MacDonald 66k
0
votes
1
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933
views
Comment: Comment: StringDB: Cannot finish their tutorial because of an error
3 months ago James W. MacDonald 66k
0
votes
0
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637
views
Comment: Comment: limma fo continous variables
3 months ago James W. MacDonald 66k
1
vote
0
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353
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Answer: Answer: locfunc not found in DESeq2
3 months ago James W. MacDonald 66k
0
votes
1
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481
views
Comment: Comment: Comparing gene expression across three tissue types to identify any difference.
3 months ago James W. MacDonald 66k
1
vote
1
reply
481
views
Answer: Answer: Comparing gene expression across three tissue types to identify any difference.
3 months ago James W. MacDonald 66k
1
vote
1
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675
views
Comment: Comment: Downloading package mixOmics
3 months ago James W. MacDonald 66k
1
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0
replies
413
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Answer: Answer: Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
3 months ago James W. MacDonald 66k
1
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0
replies
350
views
Answer: Answer: Mapping LOC genes between species using Orthology.eg.db (or a similar tool)
3 months ago James W. MacDonald 66k
0
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0
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589
views
Comment: Comment: Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
3 months ago James W. MacDonald 66k
0
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1
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589
views
Comment: Comment: Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
3 months ago James W. MacDonald 66k
8,435 results • Page 4 of 169
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