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Answer: Answer: OrgDb for maize
29 days ago James W. MacDonald 65k
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152
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Answer: Answer: SNP locus package for mouse?
4 weeks ago James W. MacDonald 65k
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220
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Answer: Answer: flowStats Search Error
4 weeks ago James W. MacDonald 65k
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135
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Comment: Comment: what is the sampleFiles
4 weeks ago James W. MacDonald 65k
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1.0k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
5 weeks ago James W. MacDonald 65k
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1.0k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
5 weeks ago James W. MacDonald 65k
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Answer: Answer: Convert Seurat Object to Summarised Experiment or ExpressionSet
5 weeks ago James W. MacDonald 65k
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522
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Comment: Comment: GSVA on separate healthy and disease datasets
5 weeks ago James W. MacDonald 65k
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460
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Comment: Comment: Not fully paired differential gene expression analysis
5 weeks ago James W. MacDonald 65k
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369
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Answer: Answer: Why is my gene not significantly differentially expressed?
5 weeks ago James W. MacDonald 65k
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460
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Answer: Answer: Not fully paired differential gene expression analysis
5 weeks ago James W. MacDonald 65k
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162
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Answer: Answer: BAM write error in HTSeqGenie
5 weeks ago James W. MacDonald 65k
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1
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522
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Answer: Answer: GSVA on separate healthy and disease datasets
5 weeks ago James W. MacDonald 65k
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1
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477
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Comment: Comment: Obtaining pheno data from CEL files
5 weeks ago James W. MacDonald 65k
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1
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368
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Answer: Answer: permutation test in edgeR
5 weeks ago James W. MacDonald 65k
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189
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Answer: Answer: How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
5 weeks ago James W. MacDonald 65k
1
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280
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
6 weeks ago James W. MacDonald 65k
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331
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Comment: Comment: Help with design.matrix
6 weeks ago James W. MacDonald 65k
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280
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Answer: Answer: Lib sizes in the DGE object are different from original lib sizes
6 weeks ago James W. MacDonald 65k
1
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258
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Answer: Answer: MethylKit read issue
6 weeks ago James W. MacDonald 65k
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1
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331
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Answer: Answer: Help with design.matrix
6 weeks ago James W. MacDonald 65k
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183
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Comment: Comment: What to the log 2 fold changes mean using LRT on time course in DESeq2
6 weeks ago James W. MacDonald 65k
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183
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Answer: Answer: What to the log 2 fold changes mean using LRT on time course in DESeq2
6 weeks ago James W. MacDonald 65k
1
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189
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Answer: Answer: DESeq2 - Missing values in count matrix
6 weeks ago James W. MacDonald 65k
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459
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
6 weeks ago James W. MacDonald 65k
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1
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459
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Answer: Answer: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
6 weeks ago James W. MacDonald 65k
0
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1
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207
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Answer: Answer: voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
6 weeks ago James W. MacDonald 65k
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477
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Comment: Comment: Obtaining pheno data from CEL files
6 weeks ago James W. MacDonald 65k
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367
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Comment: Comment: unable to access Annotationhub latest record
6 weeks ago James W. MacDonald 65k
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1
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477
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Comment: Comment: Obtaining pheno data from CEL files
6 weeks ago James W. MacDonald 65k
0
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1
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367
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Answer: Answer: unable to access Annotationhub latest record
6 weeks ago James W. MacDonald 65k
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176
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Comment: Comment: No output from read.bismark with bismark cov.files
6 weeks ago James W. MacDonald 65k
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184
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Answer: Answer: pca with VST of DESeq2 give 100% variance in PC1
6 weeks ago James W. MacDonald 65k
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165
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Answer: Answer: Multiple affymatrix IDs mapping to a single gene name
6 weeks ago James W. MacDonald 65k
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2
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437
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Comment: Comment: Internet connection for Bioconductor packages in Rstudio in Iran...
6 weeks ago James W. MacDonald 65k
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437
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Comment: Comment: Internet connection for Bioconductor packages in Rstudio in Iran...
6 weeks ago James W. MacDonald 65k
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126
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Answer: Answer: Brachypodium distachyon db
6 weeks ago James W. MacDonald 65k
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1
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198
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Answer: Answer: How to make GSEAplot with chip set
6 weeks ago James W. MacDonald 65k
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1
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193
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Answer: Answer: Gene Ontology doubt
6 weeks ago James W. MacDonald 65k
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368
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Comment: Comment: fgsea fork
7 weeks ago James W. MacDonald 65k
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2
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264
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Answer: Answer: Minfi - estimatecellscount
7 weeks ago James W. MacDonald 65k
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242
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Answer: Answer: WGCNA: analysis of complex trait associations with regressions
7 weeks ago James W. MacDonald 65k
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159
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Answer: Answer: Trimming a section of a scaffold from a genome
7 weeks ago James W. MacDonald 65k
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564
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Comment: Comment: Microarray Limma Model fitting and DEG
7 weeks ago James W. MacDonald 65k
1
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2
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564
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Answer: Answer: Microarray Limma Model fitting and DEG
7 weeks ago James W. MacDonald 65k
1
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1
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239
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Answer: Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
7 weeks ago James W. MacDonald 65k
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191
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Answer: Answer: bioconductor emailing list
7 weeks ago James W. MacDonald 65k
2
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456
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Comment: Comment: Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
7 weeks ago James W. MacDonald 65k
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1
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236
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Answer: Answer: How to extract counts from a DESeq dataset ordered by a specific sample?
7 weeks ago James W. MacDonald 65k
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481
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Comment: Comment: Batch Effect Correction, Gene Filtering
8 weeks ago James W. MacDonald 65k
8,386 results • Page 2 of 168
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