Popular Question
Created A Question With More Than 1,000 Views
Awarded 8125 times (see all awards). Earned by the
following contributors:
3 weeks, 4 days ago
Finland
Differential Expression Analysis with unbalanced batches without replication between conditions
3 weeks, 6 days ago
Wageningen University, Wageningen, the …
incomplete official symbol mitochondrial genes in org.Hs.eg.db?
1 month ago
Australia
Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
1 month, 1 week ago
Denmark
Zero intra-block correlation in RRBS analysis using voomLmFit with block
1 month, 1 week ago
United Kingdom
LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means Parameterization
1 month, 2 weeks ago
United Kingdom
More regions in union when increasing DBA$config$mergeOverlap
1 month, 3 weeks ago
United Kingdom
Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical
2 months, 1 week ago
Norway
WGCNA: minModuleSize is not responding correctly
2 months, 1 week ago
Barcelona/Universitat Pompeu Fabra
Research software engineer at UPF Barcelona
2 months, 2 weeks ago
Pakistan
Error in GOmeth function of missMethyl when EPICv2 annotation is used
2 months, 2 weeks ago
France
clusterProfiler: BgRatio N value does not match the size of the gene universe that has GO annotations.
2 months, 3 weeks ago
South Korea
[DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Application
3 months, 2 weeks ago
India
What is the importance of `--countReadPairs` in featureCounts on paired end data?
3 months, 3 weeks ago
Turkey
Deseq2 design formula and analysis with internal controls
4 months, 1 week ago
Australia
Postdoc/RA position: Software Engineer For R and High-Performance Computing
4 months, 2 weeks ago
United Kingdom
Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
4 months, 3 weeks ago
India
Query regarding phyloseq object construct with QIIME output
4 months, 3 weeks ago
United States
Inconsistent nullp and goseq enrichment results across operating systems
5 months ago
United States
limma comparison for small sample size and how to get covariance matrix
5 months, 1 week ago
United States
Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment.
5 months, 1 week ago
India
Using both voom and removeBatchEffect, will they double adjust the data or is it the right way to perform this
5 months, 3 weeks ago
Wageningen University, Wageningen, the …
Cannot install oligo on Fedora
7 months ago
United States
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
7 months, 1 week ago
United States
Why p value inconsistent when using different number of pathway score?
7 months, 2 weeks ago
WEHI, Melbourne, Australia
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
7 months, 2 weeks ago
Ireland
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
7 months, 2 weeks ago
United States
Light difference when using coef vs omit a group when compare 3 groups.
7 months, 4 weeks ago
United States
How to make boxplot with pairwise and overall p value from Limma
8 months ago
United States
The difference when using Limma compare between 3 conditions vs 2 conditions
8 months, 1 week ago
Germany
Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
9 months, 1 week ago
Canada
How to calculate p value when comparing two sets of DEGs and not applying interaction
9 months, 2 weeks ago
United States
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
10 months ago
Germany
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
10 months, 1 week ago
United States
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
10 months, 1 week ago
United States
Regressing out covariates from expression matrix for PCA visualization - can I use coefficients calculated in DESeq2??
10 months, 2 weeks ago
Australia
Merging of Human and Mouse SingleCellExperiment Objects Error
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6