Scholar
Created An Answer That Has Been Accepted
Awarded 4955 times (see all awards). Earned by the
following contributors:
2 years, 4 months ago
United States
Answer: P-values change 100-fold with only a single count changed
2 years, 4 months ago
United States
Answer: DESeq2 - batch, condition and tissue information
2 years, 4 months ago
United States
Answer: DESEQ2 Results log2fold and pvalue changes after removing genes
2 years, 5 months ago
United States
Answer: Which rlog should I use for DESeq2 analysis
2 years, 5 months ago
United States
Answer: rnaseqGene: Different output when generating step by step airway dataset
2 years, 6 months ago
United States
Answer: DESeq2 with multiple variable give me different results
2 years, 6 months ago
United States
Answer: DESeq2 normalization when using with derfinder
2 years, 6 months ago
United States
Answer: mitochondrial RNA percentage in bulk RNAseq data
2 years, 6 months ago
United States
Answer: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
2 years, 6 months ago
United States
Answer: Is it advisable to input a count matrix that consists of reads aligned using dif
2 years, 7 months ago
United States
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
2 years, 7 months ago
United States
Answer: Understanding output of Negative Binomial in DESeq2
2 years, 8 months ago
United States
Answer: Normalizing 5' Nascent RNA-seq data to identify differentially expressed transcr
2 years, 9 months ago
United States
Answer: batch effect and size factor differences: vst vs. rlog
2 years, 9 months ago
United States
Answer: Why does samples order subtly influence the results of DESeq2?
2 years, 9 months ago
United States
Answer: DRIMSeq: many NAs in results compared to DESeq2 ?
2 years, 10 months ago
United States
Answer: DESeq2 with two continuous variable in a design
2 years, 10 months ago
United States
Answer: estimateSizeFactors before or after removing non-coding genes and filtering for
2 years, 10 months ago
United States
Answer: dispersion increasing for extreme high mean counts
2 years, 10 months ago
United States
Answer: RNAseq : identical sample-sample distances after using limma::removeBatchEffect
2 years, 11 months ago
United States
Answer: Concatenating expression counts from different RNA-seq quantification tools
2 years, 11 months ago
United States
Answer: Salmon and DEseq2 - analysis of libraries saturated with ncRNAs
2 years, 11 months ago
United States
Answer: Why does limma want log2 intensities but DESeq2 use raw counts?
2 years, 11 months ago
United States
Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
2 years, 12 months ago
United States
Answer: How to retain metadata after running RemoveBatchEffect() after RUVSeq to format
3 years ago
United States
Answer: Using DESeq2 to identify changing transcriptional activity in a metagenome
3 years, 1 month ago
United States
Answer: How to reassign DESeqDataSet design to include newly added column to columnData
3 years, 1 month ago
United States
Answer: TxImport when quant.sf files have different index files
3 years, 1 month ago
United States
Answer: DEGpatterns and functional analysis of clusters
3 years, 1 month ago
United States
Answer: DESeq2: relevel() unsuccessfully setting control group
3 years, 1 month ago
United States
Answer: DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
3 years, 1 month ago
United States
Answer: Negative svalues from DESeq2 lfcShrink with ashr
3 years, 2 months ago
United States
Answer: Splitting multiple groups - three different ages
3 years, 2 months ago
United States
Answer: Using group instead of interaction term on a custom edited matrix
3 years, 2 months ago
United States
Answer: Gene Selection GTex for DESeq2 Analysis
3 years, 2 months ago
United States
Answer: Importing data into the DESeq2 pipeline using tximport
3 years, 2 months ago
United States
Answer: DEseq2: working with unbalanced number of sample in tumor study?
3 years, 2 months ago
United States
Answer: apeglm -- influence of reference level on logFC and svalues
3 years, 3 months ago
United States
Answer: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
3 years, 4 months ago
United States
Answer: Something strange in the ranking of genes by DESeq2
3 years, 4 months ago
United States
Answer: DESeq usage of transcript TPM after tximport
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6