Scholar
Created An Answer That Has Been Accepted
Awarded 4960 times (see all awards). Earned by the
following contributors:
3 years, 4 months ago
United States
Answer: Something strange in the ranking of genes by DESeq2
3 years, 4 months ago
United States
Answer: DESeq usage of transcript TPM after tximport
3 years, 5 months ago
United States
Answer: tximport with salmon bootstraps and edger/deseq2
3 years, 5 months ago
United States
Answer: DESEQ2 coldata creation from featureCounts and row.names length error
3 years, 5 months ago
United States
Answer: Different contrast coding strategies in DESeq2 produce slightly different output
3 years, 5 months ago
United States
Answer: Compare 3 RNASeq groups with no control in DESeq2
3 years, 6 months ago
United States
Answer: Calculate Cook's cutoff per comparison in DESeq2
3 years, 6 months ago
United States
Answer: VST Failing Error in estimateDispersionsFit(object, quiet = TRUE, fitType)
3 years, 6 months ago
United States
Answer: lfcShrink function for different comparison
3 years, 6 months ago
United States
Answer: How to shortlist the unaffected gene list from DESeq2 results
3 years, 6 months ago
United States
Answer: Different results if "treated/untreated" is switched to "untreated/treated" with
3 years, 6 months ago
United States
Answer: DESeq2: When to split multiple group samples for 'more' accurate sizefactors, di
3 years, 7 months ago
United States
A: Convergence of betas, iterations arguments with nbinomialWaldTest
3 years, 7 months ago
United States
A: one group against two other groups comparison using LRT test (pseudobulk approac
3 years, 7 months ago
United States
A: DEseq2: DESeq function not correcting for batch variable
3 years, 8 months ago
United States
A: How does the design formula affect dispersion estimate in DESeq2?
3 years, 8 months ago
United States
A: Design with blocking variable & factors of interest
3 years, 8 months ago
United States
A: Exceeding Over-dispersion parameter bbEstDisp
3 years, 9 months ago
United States
A: the results from normalized=TRUE and normalized = FALSE is the same
3 years, 9 months ago
United States
A: droplevels not working - error in DESeq() function
3 years, 9 months ago
United States
A: Variance stabilized values and batch correction
3 years, 9 months ago
United States
A: Cook's Distance Outliers: None reported in results table and "cooksCutoff" modif
3 years, 9 months ago
United States
A: What are the steps to use a complex model of Allelic imbalance through apeglm
3 years, 9 months ago
United States
A: tximport samples.txt file mandatory vs. optional colnames?
3 years, 9 months ago
United States
A: DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
3 years, 10 months ago
United States
A: Full length single-cell RNA-seq - tximport output for downstream analysis
3 years, 10 months ago
United States
A: DESeqDataSetFromTximport with and without offset
3 years, 10 months ago
United States
A: Tximport missing values for group summarizing counts
3 years, 10 months ago
United States
A: Custom Functional for automated DESeq2 running
3 years, 10 months ago
United States
A: Why s-values instead of p-values with non-default lfcThreshold and apeglm shrink
3 years, 10 months ago
United States
A: DESeq2: Clarification on independent filtering threshold values
4 years, 1 month ago
United States
A: Is this an issue? "Error in (function (x) : attempt to apply non-function" when
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6