Teacher
Created An Answer With At Least 3 Up-Votes
Awarded 2209 times (see all awards). Earned by the
following contributors:
5 years, 12 months ago
WEHI, Melbourne, Australia
A: edgeR: How can I determine which factors significantly explain my DE genes?
6 years ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
6 years ago
WEHI, Melbourne, Australia
A: TPM data Differential expression analysis
6 years, 1 month ago
WEHI, Melbourne, Australia
A: Separate listing of up-regulated and down-regulated genes in edgeR DGE results.
6 years, 2 months ago
WEHI, Melbourne, Australia
A: Analysis of pathways using edgeR
6 years, 2 months ago
WEHI, Melbourne, Australia
A: Difference between glmQLFTest and glmTreat in the EdgeR package
6 years, 3 months ago
WEHI, Melbourne, Australia
A: Trouble with Tximport for edgeR
6 years, 3 months ago
WEHI, Melbourne, Australia
A: Performing differential gene analysis on RT PCR experimental data
6 years, 6 months ago
WEHI, Melbourne, Australia
A: Can I meaningfully interpret a PCA or MDS plot of data with surrogate variable e
6 years, 7 months ago
WEHI, Melbourne, Australia
A: Why limma, edgeR, and DESeq did not implement fold change moderation first?
6 years, 7 months ago
WEHI, Melbourne, Australia
A: limma-trend with random effects and/or array weights
6 years, 8 months ago
WEHI, Melbourne, Australia
A: remove microarray batch effects using Limma
6 years, 8 months ago
WEHI, Melbourne, Australia
A: Examples of concise description of NGS and bioinformatics (with DESEq2 or edgeR)
6 years, 8 months ago
WEHI, Melbourne, Australia
A: read counts for each gene for edgeR
6 years, 9 months ago
WEHI, Melbourne, Australia
A: Filtering step in Differential analysis with RSEM values
6 years, 10 months ago
WEHI, Melbourne, Australia
A: Batch effect between paired and single ended reads
6 years, 10 months ago
WEHI, Melbourne, Australia
Representative gene expression value in one condition with several replicates
6 years, 10 months ago
WEHI, Melbourne, Australia
using duplicateCorrelation with limma+voom for RNA-seq data
6 years, 10 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
6 years, 10 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
6 years, 10 months ago
WEHI, Melbourne, Australia
goana limma- extract list of DE genes and genes in the enriched GO terms?
6 years, 10 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
6 years, 10 months ago
WEHI, Melbourne, Australia
limma-trend with random effects and/or array weights
6 years, 10 months ago
WEHI, Melbourne, Australia
Examples of concise description of NGS and bioinformatics (with DESEq2 or edgeR) in M&M of biological paper
6 years, 10 months ago
WEHI, Melbourne, Australia
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
6 years, 10 months ago
WEHI, Melbourne, Australia
how to use "non-standard" species for KEGG / GO analysis in limma?
6 years, 10 months ago
WEHI, Melbourne, Australia
Please share me your helpful comments with edgeR analysis without replicate
6 years, 10 months ago
WEHI, Melbourne, Australia
Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
6 years, 10 months ago
WEHI, Melbourne, Australia
RNA-Seq, generate batch-free count matrix
6 years, 10 months ago
WEHI, Melbourne, Australia
modeling heteroscedasticity in limma-voom for RNA-Seq data analysis
6 years, 10 months ago
WEHI, Melbourne, Australia
Differential expression of FPKM from RNA-seq data using limma and voom()
6 years, 10 months ago
WEHI, Melbourne, Australia
Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.ST using R with oligo and limma package
6 years, 10 months ago
WEHI, Melbourne, Australia
Test whether expression levels of two gene sets are significantly different
6 years, 10 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
6 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
6 years, 10 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
6 years, 10 months ago
WEHI, Melbourne, Australia
Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tests
6 years, 11 months ago
WEHI, Melbourne, Australia
A: Samples without pair in paired design experiment
7 years ago
WEHI, Melbourne, Australia
Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tests
7 years ago
WEHI, Melbourne, Australia
Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tests
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6