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following contributors:
9 years, 8 months ago
(Private Address)
parsing flowFrame@description in flowCore
9 years, 8 months ago
University of Padova
RUVseq PCA on raw data, whereas DESeq suggests stabilization
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Low percentage of assigned fragments with FeatureCounts
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
edger, trended or common dispersion
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
DE for genes with very low counts using limma.
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Ribosome profiling analysis in DEseq2/limma
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
On the relationship between design and contrasts
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Accounting for 5'/3' Bias in DESeq 2
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
DESeq2 how to define my conditions when I want the results comparing a subset of samples
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
How to use removeBatchEffect for removing effect of multiple confounding variables
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Usability of ERCC spike-ins in standard RNAseq experiments
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
edgeR RNA-seq analysis using glm
9 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Using multiple tools for differential gene expression analysis as validation
9 years, 8 months ago
United States
DESeq2 results(): 'name' argument and ?equivalent? numeric contrast produce different results
9 years, 8 months ago
United States
DESeq2: Question regarding changes between Bioconductor 3.2 and 3.4 or recent version changes
9 years, 8 months ago
United States
Does DESeq2 or edgeR take care of random effect in the GLM
9 years, 8 months ago
United States
Possible ways of performing differential gene expression and analysis of RNA-Seq data from normalized counts of RSEM software
9 years, 8 months ago
United States
DESeq2: Excluding results of specific contrasts from another set of results
9 years, 8 months ago
United States
Analyzing microbiome data (many zero-counts) using DESeq2
9 years, 8 months ago
United States
DESeq2: add annotations (from data frame) to DESeqDataSet
9 years, 8 months ago
United States
GenomicAlignments is too slow with summarizeOverlaps
9 years, 8 months ago
United States
AnnotationHub: two broad peaks from same url are not the same
9 years, 8 months ago
United States
readGAlignmentPairs slow in problematic region
9 years, 8 months ago
United States
How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembly?
9 years, 8 months ago
United States
Error: This function only works when used with the ensembl BioMart.
9 years, 8 months ago
United States
Error: This function only works when used with the ensembl BioMart.
9 years, 8 months ago
United States
Best method/package for Gene Set Enrichment Analysis in microarrays?
9 years, 8 months ago
United States
what is the difference between "pd.mogene.2.0.st" and "mogene20sttranscriptcluster.db"?
9 years, 8 months ago
United States
featureCount - very less Successfully assigned reads
9 years, 8 months ago
United States
Converting Protein Accessions Into Protein Symbols
9 years, 8 months ago
United States
how to extract Granges not overlapping with other ganges?
9 years, 8 months ago
United States
including information indicating upregulation/downregulation of genes in goana()
9 years, 8 months ago
United States
Voom: estimation of mean-variance relationship with gene expression data normalized with methods other than cpm
9 years, 8 months ago
United States
Interpretation of voom limma's intercept coefficient
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