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Created An Answer With At Least 3 Up-Votes
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following contributors:
9 years, 9 months ago
United States
Best method/package for Gene Set Enrichment Analysis in microarrays?
9 years, 9 months ago
United States
Interpretation of voom limma's intercept coefficient
9 years, 9 months ago
United States
including information indicating upregulation/downregulation of genes in goana()
9 years, 9 months ago
United States
Voom: estimation of mean-variance relationship with gene expression data normalized with methods other than cpm
9 years, 9 months ago
9 years, 9 months ago
EMBL European Molecular Biology Laborat…
Processing imaging data from high throughput compound screen with EBImage
9 years, 9 months ago
EMBL European Molecular Biology Laborat…
package specifically dedicated to a manuscript
9 years, 9 months ago
United States
WGCNA - Signed vs signed hybrid networks
9 years, 9 months ago
United States
A: [DESeq2] Best way to select the optimal fitType for dispersion estimates?
9 years, 9 months ago
The city by the bay
A: Clustering with differentially expressed genes in RNAseq
9 years, 9 months ago
United States
How to compare result of fisher.test() with another numeric value in R ?
9 years, 9 months ago
United States
A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
9 years, 9 months ago
Switzerland
Create custom IdeogramTrack (Gviz)
9 years, 9 months ago
Heidelberg
Possible to incorporate the sign or direction of an effect in the IHW covariate?
9 years, 9 months ago
Zentrum für Molekularbiologie, Universi…
Normalization methodology in DESeq/DESeq2 vs edgeR
9 years, 9 months ago
Zentrum für Molekularbiologie, Universi…
DEXSeq Usage and Expression Confusion
9 years, 9 months ago
Zentrum für Molekularbiologie, Universi…
DESeq2 with paired samples - problem with the design
9 years, 9 months ago
Norway
Is ComBat introducing a signal where there is none?
9 years, 9 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
9 years, 9 months ago
WEHI, Melbourne, Australia
A: Is filtering necessary to extract significant DE genes with limma ?
9 years, 9 months ago
CUNY Graduate School of Public Health a…
Integrated genomic analysis - mRNA, proteomics, flow, miRNA-seq
9 years, 9 months ago
United States
A: Questions regarding SVA batch effect normalizazion into DeSeq2 workflow
9 years, 9 months ago
WEHI, Melbourne, Australia
A: EdgeR returns small logFC values when using GLM approach
9 years, 9 months ago
Germany
Problem using sva with limma for microarray DE analysis
9 years, 9 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 9 months ago
United States
How to compare result of fisher.test() with another numeric value in R ?
9 years, 9 months ago
United States
A: PCA plot on DE genes do not separate samples. DESeq2.
9 years, 9 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
9 years, 9 months ago
Seattle, WA, United States
Generating a proper TxDb instance from NCBI GFF Annotations File
9 years, 9 months ago
United States
A: BPPARAM = bpparam() takes longer than using BPPARAM = SerialParam()
9 years, 9 months ago
United States
Perform limma on a subset of genes of interest
9 years, 9 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
9 years, 9 months ago
(Private Address)
A: How to transform cytometry data from CSV and not FCS file?
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