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following contributors:
10 years, 1 month ago
WEHI, Melbourne, Australia
A: Error when fitting linear model with technical replicates and blocking variable
10 years, 1 month ago
United States
A: DESeq2 Factorial Design correcting for Batch + Lane + RIN
10 years, 1 month ago
United States
How to find the amino acid codon corresponding to a translated genomic position
10 years, 1 month ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 1 month ago
WEHI, Melbourne, Australia
A: Interpretation of mroast gene set analysis in R and appropriate use of the funct
10 years, 1 month ago
United States
Error: This function only works when used with the ensembl BioMart.
10 years, 1 month ago
United States
A: what is the difference between "pd.mogene.2.0.st" and "mogene20sttranscriptclust
10 years, 1 month ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
United States
A: upgrade to Bioconductor version 3.2 (under R version 3.2.2)
10 years, 2 months ago
University of Padova
RUVseq PCA on raw data, whereas DESeq suggests stabilization
10 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
10 years, 2 months ago
United States
Error: This function only works when used with the ensembl BioMart.
10 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
10 years, 2 months ago
United States
A: Error: This function only works when used with the ensembl BioMart.
10 years, 2 months ago
Italy
biomaRt no longer works with proxy after upgrade
10 years, 2 months ago
Novartis Institutes for BioMedical Rese…
DEXSeq and Independent filtering
10 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
10 years, 2 months ago
The city by the bay
A: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
10 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
10 years, 2 months ago
10 years, 2 months ago
United States
how can I install packages in docker/R/bioconductor so that they persist?
10 years, 2 months ago
United States
C: how can I install packages in docker/R/bioconductor so that they persist?
10 years, 2 months ago
Barcelona/Universitat Pompeu Fabra
Best method/package for Gene Set Enrichment Analysis in microarrays?
10 years, 2 months ago
Barcelona/Universitat Pompeu Fabra
A: Best method/package for Gene Set Enrichment Analysis in microarrays?
10 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
10 years, 2 months ago
Italy
biomaRt no longer works with proxy after upgrade
10 years, 2 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
The city by the bay
A: Help with design matrix for two cell types, multiple treatments
10 years, 2 months ago
United States
A: .fastq to .txt conversion for EdgeR package and merging two paired end sequence
10 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
10 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
United States
A: Unable to use qvalue. Estimated pi0 is <=0
10 years, 2 months ago
The city by the bay
A: getting a list of probe IDs from topTable (limma version 3.18.13)
10 years, 2 months ago
The city by the bay
A: Limma get all DE genes or filter by logFC
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