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10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
Novartis Institutes for BioMedical Rese…
A: Translating model formula from DESeq to DEXSeq
10 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
10 years, 2 months ago
Argentina/Cordoba/Universidad Católica …
RDAVIDWebService Error 301: Moved Permanently
10 years, 2 months ago
Italy
A: BiomaRt workaround when Biomart server closed
10 years, 2 months ago
United States
Quality control on RNA-Seq (level 3) data from TCGA
10 years, 2 months ago
United States
A: Quality control on RNA-Seq (level 3) data from TCGA
10 years, 2 months ago
Italy
A: makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
10 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
10 years, 2 months ago
WEHI, Melbourne, Australia
A: FDR and padj in deseq and edger
10 years, 2 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
10 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
10 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
Correct assumptions of using limma moderated t-test
10 years, 2 months ago
United States
How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembly?
10 years, 2 months ago
United States
A: How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembl
10 years, 2 months ago
The city by the bay
limma Time Course Experiment with many time points
10 years, 2 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
10 years, 2 months ago
United States
Interpreting Contrast Comparisons in edgeR
10 years, 3 months ago
The city by the bay
A: Limma model for 4 factor (2*2*2*2) design to detect the factor specific effect a
10 years, 3 months ago
United States
Interpreting Contrast Comparisons in edgeR
10 years, 3 months ago
United States
A: Interpreting Contrast Comparisons in edgeR
10 years, 3 months ago
The city by the bay
modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
10 years, 3 months ago
United States
How to find particular types of overlap with GenomicRanges
10 years, 3 months ago
The city by the bay
A: Csaw : filter windows based on matched negative control
10 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
10 years, 3 months ago
University of Oxford
Is it common to get all 0 values when running the randomForest step in GOexpress?
10 years, 3 months ago
WEHI, Melbourne, Australia
A: Estimating and removing batch effects from rna-seq dataset
10 years, 3 months ago
The city by the bay
A: EdgeR - RNA-Seq time course analysis - Testing main and interaction effects and
10 years, 3 months ago
The city by the bay
A: Calculating contrasts for continuous variable anad interaction effect in Limma
10 years, 3 months ago
United States
A: Finding gene lengths of mm10 to calculate rpkm grom count matrix of rna-seq data
10 years, 3 months ago
WEHI, Melbourne, Australia
A: Limma camera function never gives any differentially expressed gene sets
10 years, 3 months ago
WEHI, Melbourne, Australia
Using limma when continuous and categorical confounders are present at the same time (e.g.age, gender)
10 years, 3 months ago
WEHI, Melbourne, Australia
Adjust p-values of a matrix of p-values
10 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
10 years, 3 months ago
WEHI, Melbourne, Australia
Using of limma moderated t-test with "corrected" expression matrix resulting from ComBat batch effect correction
10 years, 3 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
10 years, 3 months ago
WEHI, Melbourne, Australia
How to read single red channel data with Limma
10 years, 3 months ago
WEHI, Melbourne, Australia
How to use normalized values by EDASeq in edgeR?
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