I have installed packages xcms, multtest, and faahKO two times before and they have been operational at the time. I have noticed that the packages disappears from the package list on Rstudio after a while they are still available on R directory of my computer. Why does this happen?
In addition it is always a problem to install faahKO package. One should try several times and restart the computer.
I use the command to install:
After trying faahKO installation:
> source("https://bioconductor.org/biocLite.R") Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help > biocLite("faahKO") BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30). Installing package(s) ‘faahKO’ installing the source package ‘faahKO’ trying URL 'https://bioconductor.org/packages/3.5/data/experiment/src/contrib/faahKO_1.16.0.tar.gz' Content type 'application/x-gzip' length 16402730 bytes (15.6 MB) downloaded 15.6 MB '\\storage.slu.se\Home$\ali\My Documents' CMD.EXE was started with the above path as the current directory. UNC paths are not supported. Defaulting to Windows directory. * installing *source* package 'faahKO' ... ** R ** data ** inst ** preparing package for lazy loading Error : package 'MSnbase' required by 'xcms' could not be found ERROR: lazy loading failed for package 'faahKO' * removing '\\storage.slu.se/Home$/ali/My Documents/R/win-library/3.4/faahKO' The downloaded source packages are in ‘C:\Users\ali\AppData\Local\Temp\RtmpaevhVS\downloaded_packages’ installation path not writeable, unable to update packages: boot, Matrix, mgcv Warning messages: 1: running command '"C:/PROGRA~1/R/R-34~1.1/bin/x64/R" CMD INSTALL -l "\\storage.slu.se\Home$\ali\My Documents\R\win-library\3.4" C:\Users\ali\AppData\Local\Temp\RtmpaevhVS/downloaded_packages/faahKO_1.16.0.tar.gz' had status 1 2: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘faahKO’ had non-zero exit status