Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
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barb.bryant ▴ 10
@barbbryant-13024
Last seen 3.9 years ago

I want to upgrade to Bioconductor 3.6. I followed the instructions to upgrade R (I have 3.4.2), and source("https://bioconductor.org/biocLite.R"). However, it shows 3.5 still. Running biocLite() does not change this. 

I tried removing the biocInstaller package as was suggested by some, but that did not get me to 3.6

sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 15063)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.26.1

loaded via a namespace (and not attached):
[1] compiler_3.4.2 tools_3.4.2
>

bioconductor bioclite • 885 views
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shepherl 2.8k
@lshep
Last seen 1 day ago
United States

We are sorry for the confusion we were still in the process of updating the functions for release Bioc 3.6.  Please try again and let us know if you are still having trouble. 

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It's still not working correctly.

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Can you provide some more detail?

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My mistake -- now fine.

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Users of R-devel / bioc-devel will experience issues for the next hour or so; windows users of R-devel will need to install from source for the next day or so (at least some CRAN windows binaries seem to be built with R-3.4.2 instead of R-devel).

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