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Question: Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
1
gravatar for barb.bryant
10 months ago by
barb.bryant10
barb.bryant10 wrote:

I want to upgrade to Bioconductor 3.6. I followed the instructions to upgrade R (I have 3.4.2), and source("https://bioconductor.org/biocLite.R"). However, it shows 3.5 still. Running biocLite() does not change this. 

I tried removing the biocInstaller package as was suggested by some, but that did not get me to 3.6

sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 15063)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.26.1

loaded via a namespace (and not attached):
[1] compiler_3.4.2 tools_3.4.2
>

ADD COMMENTlink modified 10 months ago by shepherl ♦♦ 750 • written 10 months ago by barb.bryant10
0
gravatar for shepherl
10 months ago by
shepherl ♦♦ 750
United States
shepherl ♦♦ 750 wrote:

We are sorry for the confusion we were still in the process of updating the functions for release Bioc 3.6.  Please try again and let us know if you are still having trouble. 

ADD COMMENTlink written 10 months ago by shepherl ♦♦ 750

It's still not working correctly.

ADD REPLYlink modified 10 months ago • written 10 months ago by Gordon Smyth35k

Can you provide some more detail?

ADD REPLYlink written 10 months ago by Martin Morgan ♦♦ 22k
1

My mistake -- now fine.

ADD REPLYlink written 10 months ago by Gordon Smyth35k

Users of R-devel / bioc-devel will experience issues for the next hour or so; windows users of R-devel will need to install from source for the next day or so (at least some CRAN windows binaries seem to be built with R-3.4.2 instead of R-devel).

ADD REPLYlink written 10 months ago by Martin Morgan ♦♦ 22k
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