Question: R packages for differential expression analysis of raw data from arraystar microarrays
0
gravatar for ntagaras
20 months ago by
ntagaras0
ntagaras0 wrote:

Dear bioconductor users, 

I am a new user of R language!!

I would like to ask you a question: I have raw mRNA, LncRNA and miRNA data from arraystar microarray (Mouse LncRNA Microarray Version 2.0)​ and I want to perform differential expression analysis between 2 conditions. Could you recommend me any tutorial or R packages to analyze my raw data (convert raw data to log2 transformed and differential expression analysis)? 

I would be grateful of hearing your opinion!!

Thank you very much for your time in advance!!

Sincerely,

Nick

ADD COMMENTlink modified 20 months ago by Axel Klenk930 • written 20 months ago by ntagaras0
Answer: R packages for differential expression analysis of raw data from arraystar micro
0
gravatar for Axel Klenk
20 months ago by
Axel Klenk930
Switzerland
Axel Klenk930 wrote:

Dear Nick,

I have never used nor even heard of arraystar microarrays, but in general the limma package

provides all the functionality for importing, preprocessing and analyzing microarray data. It comes

with an extensive user's guide which may help you to get your data analyzed.

Good luck,

 - axel

 

ADD COMMENTlink written 20 months ago by Axel Klenk930

Dear Axel, 

thank you for your reply!

Kind regards,

NIck 

ADD REPLYlink written 20 months ago by ntagaras0
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