Question: R packages for differential expression analysis of raw data from arraystar microarrays
0
gravatar for ntagaras
2.0 years ago by
ntagaras0
ntagaras0 wrote:

Dear bioconductor users, 

I am a new user of R language!!

I would like to ask you a question: I have raw mRNA, LncRNA and miRNA data from arraystar microarray (Mouse LncRNA Microarray Version 2.0)​ and I want to perform differential expression analysis between 2 conditions. Could you recommend me any tutorial or R packages to analyze my raw data (convert raw data to log2 transformed and differential expression analysis)? 

I would be grateful of hearing your opinion!!

Thank you very much for your time in advance!!

Sincerely,

Nick

ADD COMMENTlink modified 2.0 years ago by Axel Klenk940 • written 2.0 years ago by ntagaras0
Answer: R packages for differential expression analysis of raw data from arraystar micro
0
gravatar for Axel Klenk
2.0 years ago by
Axel Klenk940
Switzerland
Axel Klenk940 wrote:

Dear Nick,

I have never used nor even heard of arraystar microarrays, but in general the limma package

provides all the functionality for importing, preprocessing and analyzing microarray data. It comes

with an extensive user's guide which may help you to get your data analyzed.

Good luck,

 - axel

 

ADD COMMENTlink written 2.0 years ago by Axel Klenk940

Dear Axel, 

thank you for your reply!

Kind regards,

NIck 

ADD REPLYlink written 2.0 years ago by ntagaras0
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