Bioconductor Mrna

Showing : mrna • reset

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lncRNA probeID mRNA genesymbol

9 months ago Sooni ▴ 10

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mircomb mrna mirna degs interaction

3.4 years ago andreia ▴ 10

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microarray lncrna microrna mrna raw data

updated 6.0 years ago by Axel Klenk ▴ 990 • written 6.0 years ago by ntagaras • 0

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R bioconductor RNA mRNA RNA binding proteins

6.7 years ago Walter F. Baumann ▴ 10

4 results • Page 1 of 1

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Comment: Ensembl down??? by James W. MacDonald 64k

Yup, they seem to be down. What exactly are you trying to do? There may be other options.

Answer: Result from GSEA for non-model organism not as expected by Aastha Kapoor • 0

I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…

Comment: Timely differentially expressed genes by triZZla • 0

Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…

Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i by ATpoint ★ 3.6k

What is the output of below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 miRNA_counts[below_zero,,drop=FALSE]

Comment: Problem loading HDF5Array in R 4.3.2 by Mike Smith ★ 6.2k

Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…

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Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

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Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k