Bioconductor Lncrna

Showing : lncrna • reset

votes

replies

524

views

lncRNA probeID mRNA genesymbol

2.2 years ago Sooni ▴ 10

votes

replies

1.7k

views

recount RNAseq gencode lncRNA gene annotation

updated 6.0 years ago by chris.wilks ▴ 70 • written 6.1 years ago by francesco.gandolfi ▴ 20

votes

1.8k

views

GenomicFeatures TPM FPKM lncRNA

6.9 years ago Ina Hoeschele ▴ 620

votes

replies

3.9k

views

lncRNA featureCounts STAR annotation

updated 6.9 years ago by Wei Shi ★ 3.6k • written 6.9 years ago by inah ▴ 10

votes

replies

1.7k

views

microarray lncrna microrna mrna raw data

updated 7.4 years ago by Axel Klenk ★ 1.1k • written 7.4 years ago by ntagaras • 0

votes

replies

3.6k

views

arraystar lncRNA annotation annotationdbi

updated 9.7 years ago by xiangy7 • 0 • written 10.1 years ago by Kevin Coombes ▴ 430

6 results • Page 1 of 1

Recent ...

Replies

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k

All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…

Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k

> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…

Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…

Votes

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

Awards • All

Popular Question to Dario Strbenac ★ 1.6k