News: Ensembl 91 EnsDb databases added to AnnotationHub
gravatar for Johannes Rainer
23 months ago by
Johannes Rainer1.5k
Johannes Rainer1.5k wrote:

Dear all,

EnsDb databases (for ensembldb) for Ensembl release 91 are available for current Bioc3.7 (devel).

> library(AnnotationHub)
> query(AnnotationHub(), "Ensembl 91 EnsDb")
snapshotDate(): 2017-12-21
AnnotationHub with 88 records
# snapshotDate(): 2017-12-21
# $dataprovider: Ensembl
# $species: Ailuropoda Melanoleuca, Anas Platyrhynchos, Anolis Carolinensis,...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["AH60740"]]'

  AH60740 | Ensembl 91 EnsDb for Anolis Carolinensis   
  AH60741 | Ensembl 91 EnsDb for Ailuropoda Melanoleuca
  AH60742 | Ensembl 91 EnsDb for Astyanax Mexicanus    
  AH60743 | Ensembl 91 EnsDb for Aotus Nancymaae       
  AH60744 | Ensembl 91 EnsDb for Anas Platyrhynchos    
  ...       ...                                        
  AH60823 | Ensembl 91 EnsDb for Takifugu Rubripes     
  AH60824 | Ensembl 91 EnsDb for Tursiops Truncatus    
  AH60825 | Ensembl 91 EnsDb for Vicugna Pacos         
  AH60826 | Ensembl 91 EnsDb for Xiphophorus Maculatus
  AH60827 | Ensembl 91 EnsDb for Xenopus Tropicalis    


cheers, jo

ADD COMMENTlink written 23 months ago by Johannes Rainer1.5k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 367 users visited in the last hour