News: Ensembl 91 EnsDb databases added to AnnotationHub
gravatar for Johannes Rainer
3 months ago by
Johannes Rainer1.2k
Johannes Rainer1.2k wrote:

Dear all,

EnsDb databases (for ensembldb) for Ensembl release 91 are available for current Bioc3.7 (devel).

> library(AnnotationHub)
> query(AnnotationHub(), "Ensembl 91 EnsDb")
snapshotDate(): 2017-12-21
AnnotationHub with 88 records
# snapshotDate(): 2017-12-21
# $dataprovider: Ensembl
# $species: Ailuropoda Melanoleuca, Anas Platyrhynchos, Anolis Carolinensis,...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["AH60740"]]'

  AH60740 | Ensembl 91 EnsDb for Anolis Carolinensis   
  AH60741 | Ensembl 91 EnsDb for Ailuropoda Melanoleuca
  AH60742 | Ensembl 91 EnsDb for Astyanax Mexicanus    
  AH60743 | Ensembl 91 EnsDb for Aotus Nancymaae       
  AH60744 | Ensembl 91 EnsDb for Anas Platyrhynchos    
  ...       ...                                        
  AH60823 | Ensembl 91 EnsDb for Takifugu Rubripes     
  AH60824 | Ensembl 91 EnsDb for Tursiops Truncatus    
  AH60825 | Ensembl 91 EnsDb for Vicugna Pacos         
  AH60826 | Ensembl 91 EnsDb for Xiphophorus Maculatus
  AH60827 | Ensembl 91 EnsDb for Xenopus Tropicalis    


cheers, jo

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