Hi,

I have a series of single-stained compensation controls (fcs files) loaded into  flowSet object which I would want to re-order to be used for calculating my spillover.

Best

Sam

This can be done by subsetting the flowSet with the re-ordered sample indices, e.g.:

set2 = set1[c(5,7,1:3,4,8)]

then check the order of the samples

sampleNames(set2)

...Oh I missed that!

Thanks, Jaro!

Best, Sam