The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.

The current list of deprecated packages is as follows:

Maintainer requested deprecation:

Software Package:

ontoCAT

Experiment Data Package:

RnaSeqTutorial

cheung2010

MEALData (replaced with brgedata)

Unresponsive/not-maintained packages:

Software:

GMRP

MBttest

OperaMate

ToPASeq

DASC

RamiGO

htSeqTools

PAnnBuilder

We have had a maintainer offer to take over ToPASeq so this might come out of deprecation.

We did not announce that the following is also no longer available

Experiment Data Package: IlluminaHumanMethylation450k.db