The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.
The current list of deprecated packages is as follows:
Maintainer requested deprecation:
Software Package: ontoCAT Experiment Data Package: RnaSeqTutorial cheung2010 MEALData (replaced with brgedata)
Software: GMRP MBttest OperaMate ToPASeq DASC RamiGO htSeqTools PAnnBuilder
We have had a maintainer offer to take over ToPASeq so this might come out of deprecation.
We did not announce that the following is also no longer available
Experiment Data Package: IlluminaHumanMethylation450k.db