Entering edit mode
The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.
The current list of deprecated packages is as follows:
Maintainer requested deprecation:
Software Package:
ontoCAT
spliceR (functionalities moved to IsoformSwitchAnalyzeR)
mvGST
Experiment Data Package:
RnaSeqTutorial
cheung2010
MEALData (replaced with brgedata)
Unresponsive/not-maintained packages:
Software:
GMRP
MBttest
OperaMate
ToPASeq
DASC
RamiGO
htSeqTools
PAnnBuilder
DMRScan
XBSeq
ToPASeq
has transitioned to a new maintainer so we expect this to come out of deprecation before the release.
We did not announce that the following is also no longer available
Experiment Data Package: IlluminaHumanMethylation450k.db