I've been trying to follow the DeSeq2 manual (https://bioconductor.org/packages/3.7/bioc/vignettes/DESeq/inst/doc/DESeq.pdf) but I've been hitting a problem in this part:
> pasillaCountTable = read.table( datafile, header=TRUE, row.names=1 )
> head( pasillaCountTable )
For my data, I have GeneID duplicates and consequently row duplicates. Anyone know a way to get around this? Or a way to compress my GeneIDs into one GeneID row without compromising the data?