Trouble installing bioconductor packages: ERROR: sub-architecture 'R' is not installed
1
1
Entering edit mode
brt381 • 0
@brt381-9339
Last seen 6.6 years ago
Canada

When I try to install the Bioconductor package org.Hs.eg.db (as well as certain other packages) on Mac OS X, I get the error message "ERROR: sub-architecture 'R' is not installed". For (e.g.) github packages, I can get rid of this error by saying:

install_github("package_name", args="--no-multiarch")

But how do I do this for Bioconductor packages?

Thanks in advance!

package installation mac os x • 2.5k views
ADD COMMENT
2
Entering edit mode
@martin-morgan-1513
Last seen 3 months ago
United States

I think you meanĀ install_github("package_name", INSTALL_opts="no-multiarch") ? The same syntax is supported by biocLite("org.Hs.eg.db", INSTALL_opts="no-multiarch"). Both install_github() and biocLite() are wrappers around install.packages(), and forward arguments there. `

ADD COMMENT
0
Entering edit mode

Great, thank you! Although it should be INSTALL_opts="--no-multiarch" rather thanĀ INSTALL_opts="no-multiarch".

ADD REPLY

Login before adding your answer.

Traffic: 815 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6