News: ensembl 92 gtfs and fasta twobits have been added to AnnotationHub
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gravatar for shepherl
18 months ago by
shepherl ♦♦ 1.5k
United States
shepherl ♦♦ 1.5k wrote:

Hello all,

The ensembl 92 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.7

Bioconductor version 3.7 (BiocInstaller 1.29.6), ?biocLite for help

> library(AnnotationHub) 
> hub = AnnotationHub() 
snapshotDate(): 2018-04-19 
> length(query(hub, c("ensembl", "gtf", "release-92"))) 
[1] 282 
> length(query(hub, c("fasta", "release-92", "twobit"))) 
[1] 453
ADD COMMENTlink modified 18 months ago • written 18 months ago by shepherl ♦♦ 1.5k
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