The editor has been updated to markdown! Please see more info at: Tutorial: Updated Support Site Editor

News: ensembl 92 gtfs and fasta twobits have been added to AnnotationHub
gravatar for shepherl
10 months ago by
shepherl ♦♦ 1.1k
United States
shepherl ♦♦ 1.1k wrote:

Hello all,

The ensembl 92 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.7

Bioconductor version 3.7 (BiocInstaller 1.29.6), ?biocLite for help

> library(AnnotationHub) 
> hub = AnnotationHub() 
snapshotDate(): 2018-04-19 
> length(query(hub, c("ensembl", "gtf", "release-92"))) 
[1] 282 
> length(query(hub, c("fasta", "release-92", "twobit"))) 
[1] 453
ADD COMMENTlink modified 10 months ago • written 10 months ago by shepherl ♦♦ 1.1k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 181 users visited in the last hour