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News: ensembl 92 gtfs and fasta twobits have been added to AnnotationHub
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gravatar for shepherl
7 months ago by
shepherl ♦♦ 870
United States
shepherl ♦♦ 870 wrote:

Hello all,

The ensembl 92 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.7

Bioconductor version 3.7 (BiocInstaller 1.29.6), ?biocLite for help

> library(AnnotationHub) 
> hub = AnnotationHub() 
snapshotDate(): 2018-04-19 
> length(query(hub, c("ensembl", "gtf", "release-92"))) 
[1] 282 
> length(query(hub, c("fasta", "release-92", "twobit"))) 
[1] 453
ADD COMMENTlink modified 7 months ago • written 7 months ago by shepherl ♦♦ 870
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