Question: comparing 2 long BED files in R in an efficient way
0
gravatar for Bogdan
16 months ago by
Bogdan580
Palo Alto, CA, USA
Bogdan580 wrote:

Dear all,

please would you advise about an efficient R code to solve the following problem :

-- given a BED file with the variant coordinates (> 10 000 entries) : let's call the file A

-- and a BED file with the gene coordinates (>50 000 genes) :  let's call the file B

what is most efficient way to write the comparison in R, between file A and file B, and append the gene from file B to the file A, if there is an intersection of genomic coordinates ? thanks a lot !

 

bogdan

vcf bed • 227 views
ADD COMMENTlink modified 16 months ago by GENOMIC_region0 • written 16 months ago by Bogdan580
Answer: comparing 2 long BED files in R in an efficient way
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gravatar for GENOMIC_region
16 months ago by
GENOMIC_region0 wrote:

Cross posted: https://www.biostars.org/p/324164/

ADD COMMENTlink written 16 months ago by GENOMIC_region0
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