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peter.fransquet
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@peterfransquet-15875
Last seen 6.3 years ago
I am new to analyzing DNA methylation data on an array scale. i have worked on a pipeline and done some analysis so i have some basic knowledge but want to start over to make sure my QC and analysis are correct. Thus, i have hit my first bump. After SWAN normalisation, most samples fell into line apart from one that is clearly out on the 'methylated' mode, and a few are a bit hairy in the middle.
please see image here,
The sample passed detectionP no problems, do you think its distribution on the graph is means to remove the sample?
Kind Regards,
Pete
Further, if anyone can tell me how to derive my own answer i would greatly appreciate the opportunity to learn how!